# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 8.32e-32 2o8jA 281 5.39e-31 2igqA 285 1.21e-30 3bo5A 290 1.00e-29 2r3aA 300 3.63e-29 1ml9A 302 4.79e-28 b.85.7.1 79282 1n6aA 259 8.24e-28 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 1.01e-27 b.76.2.1,b.85.7.1 133035,133036 1zkkA 167 1.56e-27 2qpwA 149 4.97e-27 1n3jA 119 3.72e-20 b.85.7.2 79963 2h21A 440 9.28e-13 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 8.89e-12 a.166.1.1,b.85.7.3 87654,87655 2p52A 196 0.4399 2vphA 100 0.7332 1l8fA 207 3.125 b.52.1.1 84537 2pcxA 220 3.478 2eng 210 3.570 2prvA 153 3.867 2ag4A 164 4.921 b.95.1.1 126717 1gky 187 5.149 2a1hA 365 6.186 e.17.1.1 125997 1be9A 119 6.286 b.36.1.1 24774 1nziA 159 6.314 b.23.1.1,g.3.11.1 86449,86450 2ag9A 164 6.369 1iyeA 309 7.177 e.17.1.1 83786 1wrvA 308 7.475 1rutX 188 7.911 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1v5lA 103 8.813 b.36.1.1 108378 2q3gA 89 9.936 2eiyA 308 9.939 3daaA 277 9.99 e.17.1.1 43272 1a0gA 282 10.50 e.17.1.1 43276 1uasA 362 10.99 b.71.1.1,c.1.8.1 88388,88389 1v61A 132 11.05 b.55.1.1 108389 1ekfA 365 11.68 e.17.1.1 59445 1gpr 162 11.80 2a25A 193 11.92 1g9oA 91 13.68 b.36.1.1 60400 1u5fA 148 13.77 b.55.1.1 119542 1hq8A 123 13.86 d.169.1.1 61127 2pktA 91 14.45 1wcdJ 441 15.19 b.121.4.9 120887 1wmzA 140 15.63 d.169.1.1 109422 1vfyA 73 16.70 g.50.1.1 45357 1h9dA 134 16.73 b.2.5.6 60821 2ozfA 92 17.03 1f7zA 233 19.06 b.47.1.2 59681 1z8fA 228 19.65 1dvpA 220 19.93 a.118.9.2,g.50.1.1 19216,45358 2engA 210 20.57 b.52.1.1 26895 2bmwA 304 20.87 b.43.4.2,c.25.1.1 128815,128816 1tr7A 164 22.46 b.2.3.2 119328 1qavA 90 22.67 b.36.1.1 24777 2ns9A 157 22.98 1v6fA 151 23.27 d.109.1.2 108395 1mq7A 154 23.53 b.85.4.1 79404 1f3zA 161 23.74 b.84.3.1 28273 1gprA 162 24.30 b.84.3.1 28267 1qauA 112 25.12 b.36.1.1 24779 1uwfA 158 25.73 b.2.3.2 119758 2v90A 96 25.89 1kbpA 432 27.04 b.1.12.1,d.159.1.1 22349,42068 1zhvA 134 27.21 d.58.18.8,d.58.18.8 125109,125110 2de6A 392 28.16 b.33.1.2,d.129.3.3 131415,131416 1k2fA 190 28.54 b.8.1.2 68054 1wf7A 103 29.77 b.36.1.1 114577 1onqA 283 30.06 b.1.1.2,d.19.1.1 93365,93366 1mpuA 138 30.10 d.169.1.1 85040 1vlyA 338 30.49 b.44.2.1,d.250.1.1 108871,108872 2e63A 170 30.96 2ocsA 88 31.51 1wu2A 396 32.38 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 2p9oA 169 33.46 2apr 325 33.66 2o1qA 145 33.71 3bpuA 88 33.75 2pa1A 87 36.40 2fwvA 226 36.76 1y7mA 164 39.74 b.160.1.1,d.7.1.1 122696,122697 2gc1A 188 40.20 b.82.1.7 134928 1auvA 311 40.31 c.30.1.5,d.142.1.3 31723,41558 2egoA 96 40.39 1f7dA 136 40.45 b.85.4.1 28353 2bkrA 212 40.95 d.3.1.7 128710 1zpsA 138 40.97 b.168.1.1 125473 1n27A 96 42.64 b.34.9.2 91549 1n7eA 97 42.68 b.36.1.1 91691 2qdlA 165 42.97 2plrA 213 43.10 1sixA 174 43.94 b.85.4.1 98892 1nf3C 128 46.32 b.36.1.1 85596 1ca1A 370 47.27 a.124.1.1,b.12.1.3 19340,23648 1whmA 92 47.37 b.34.10.1 114647 2yzuA 109 47.62 2j3hA 345 47.83 1thxA 115 48.59 c.47.1.1 32732 1zjkA 403 48.95 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 2iiaA 131 49.71 1zc3B 113 49.97 b.55.1.1 124881 1lm5A 214 50.41 d.211.2.1 74029 1kg0C 136 52.01 d.169.1.1 72445 1gy7A 125 53.19 d.17.4.2 70738 2iwoA 120 53.39 1xjcA 169 54.12 c.37.1.10 115387 2dg1A 333 54.34 b.68.6.1 131493 2a13A 166 54.66 b.60.1.8 125971 1znwA 207 56.26 c.37.1.1 125412 1wosA 364 57.18 b.44.2.1,d.250.1.1 109468,109469 1tp5A 119 57.42 b.36.1.1 119305 2ho9A 167 57.58 1q3oA 109 59.61 b.36.1.1 95700 1inlA 296 61.54 c.66.1.17 66220 2biqA 219 63.50 1r94A 118 65.19 b.124.1.1 97251 2f1lA 187 65.87 b.41.1.4,b.43.3.4 132780,132781 1g13A 162 68.14 b.95.1.1 60194 2gy5A 423 69.53 1h30A 422 69.60 b.29.1.4,b.29.1.4 76604,76605 1sffA 426 70.09 c.67.1.4 105482 1ybyA 215 70.18 1s98A 107 70.85 b.124.1.1 105377 1zowA 313 71.46 2cvkA 110 71.58 2he4A 90 72.27 2v72A 143 73.14 2e0qA 104 73.38 2qeaA 160 73.59 1u5mA 73 73.65 g.27.1.2 113043 1bkb 136 73.92 2ok8A 316 75.49 2df7A 458 76.96 b.121.4.9 131449 1xuuA 349 77.74 b.85.1.1,c.1.10.6 116067,116068 1te5A 257 78.80 d.153.1.1 106795 2i6gA 199 79.46 c.66.1.44 137096 1eo9A 209 79.67 b.3.6.1 22731 2z0bA 131 80.01 1mdaH 368 80.25 b.69.2.1 27637 1yo8A 634 81.56 2vp4A 230 81.62 1w1hA 151 81.69 b.55.1.1 114076 1tw4A 125 81.81 b.60.1.2 112690 1abrB 267 82.63 b.42.2.1,b.42.2.1 25563,25564 1q5hA 147 82.93 b.85.4.1 95893 2coiA 386 84.00 1sz6B 263 84.02 b.42.2.1,b.42.2.1 112172,112173 2g1lA 104 84.04 b.26.1.2 134520 2uzcA 88 84.13 2b79A 144 84.16 2e26A 725 84.52 1ol0A 121 85.27 b.1.1.1 93296 1bkf 107 87.86 2bwjA 199 88.16 1dunA 134 88.19 b.85.4.1 28371 2i5nH 258 88.97 b.41.1.1,f.23.10.1 137064,137065 1i7nA 309 89.10 c.30.1.5,d.142.1.3 83681,83682 1l1dA 152 89.62 b.88.1.3 73452 2qntA 141 89.75