# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 1.50e-34 2o8jA 281 1.35e-33 2igqA 285 4.33e-33 3bo5A 290 5.60e-32 2r3aA 300 1.87e-31 2f69A 261 1.22e-30 b.76.2.1,b.85.7.1 133035,133036 1n6aA 259 1.46e-30 b.76.2.1,b.85.7.1 80121,80122 1ml9A 302 3.50e-30 b.85.7.1 79282 1zkkA 167 6.49e-30 2qpwA 149 1.73e-29 1n3jA 119 6.14e-22 b.85.7.2 79963 2h21A 440 1.41e-14 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 9.56e-13 a.166.1.1,b.85.7.3 87654,87655 1l8fA 207 0.4290 b.52.1.1 84537 2eng 210 0.5401 2p52A 196 0.5815 2a1hA 365 1.994 e.17.1.1 125997 2pcxA 220 2.336 2ag4A 164 2.885 b.95.1.1 126717 2vphA 100 2.992 2engA 210 3.279 b.52.1.1 26895 1ekfA 365 3.585 e.17.1.1 59445 1z8fA 228 4.034 1iyeA 309 4.258 e.17.1.1 83786 1wrvA 308 4.708 2ag9A 164 5.047 1gky 187 5.510 1uasA 362 6.700 b.71.1.1,c.1.8.1 88388,88389 2eiyA 308 6.985 2prvA 153 8.040 1znwA 207 8.056 c.37.1.1 125412 3daaA 277 9.612 e.17.1.1 43272 2j3hA 345 9.866 1nziA 159 10.35 b.23.1.1,g.3.11.1 86449,86450 1a0gA 282 10.37 e.17.1.1 43276 2apr 325 11.09 1gpr 162 11.53 1sffA 426 11.84 c.67.1.4 105482 1k2fA 190 13.72 b.8.1.2 68054 1hq8A 123 13.95 d.169.1.1 61127 2de6A 392 14.46 b.33.1.2,d.129.3.3 131415,131416 2ns9A 157 14.58 1wmzA 140 15.19 d.169.1.1 109422 2ac0A 200 17.35 b.2.5.2 126539 1xuuA 349 18.48 b.85.1.1,c.1.10.6 116067,116068 2coiA 386 19.78 1wl7A 312 19.99 b.67.2.1 120996 1v5lA 103 20.05 b.36.1.1 108378 1rutX 188 20.28 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2bmwA 304 20.46 b.43.4.2,c.25.1.1 128815,128816 1tr7A 164 20.59 b.2.3.2 119328 1gprA 162 20.81 b.84.3.1 28267 1uwfA 158 20.81 b.2.3.2 119758 1f3zA 161 21.13 b.84.3.1 28273 2p9oA 169 21.14 1u5fA 148 21.35 b.55.1.1 119542 1be9A 119 22.82 b.36.1.1 24774 2yzuA 109 23.14 2cvkA 110 23.38 2de6D 115 23.63 1onqA 283 24.18 b.1.1.2,d.19.1.1 93365,93366 2gc1A 188 25.42 b.82.1.7 134928 1f7zA 233 26.11 b.47.1.2 59681 2a25A 193 27.16 1y7mA 164 27.29 b.160.1.1,d.7.1.1 122696,122697 1vfyA 73 27.52 g.50.1.1 45357 1uypA 432 27.72 b.29.1.19,b.67.2.3 100176,100177 3c1aA 315 28.13 2q3gA 89 28.30 1thxA 115 28.71 c.47.1.1 32732 1v6fA 151 29.08 d.109.1.2 108395 1zjkA 403 30.36 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 2ac1A 541 31.82 2biqA 219 32.79 2fsaA 174 32.89 1wcdJ 441 34.17 b.121.4.9 120887 2ok8A 316 34.72 1mq7A 154 35.43 b.85.4.1 79404 1sixA 174 35.73 b.85.4.1 98892 1gy7A 125 36.41 d.17.4.2 70738 1v61A 132 36.94 b.55.1.1 108389 1wu2A 396 36.96 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 1s68A 249 38.73 d.142.2.4 98591 1nt2A 210 38.87 c.66.1.3 86149 1sjgA 112 38.96 b.33.1.1 105647 1auvA 311 39.52 c.30.1.5,d.142.1.3 31723,41558 2fwvA 226 39.94 1g13A 162 40.77 b.95.1.1 60194 1h9dA 134 40.91 b.2.5.6 60821 2plrA 213 41.83 2ho9A 167 43.73 1gl4A 285 44.31 d.22.1.2,g.3.11.5 65286,65287 1kqfA 1015 44.41 b.52.2.2,c.81.1.1 72871,72872 2qdlA 165 45.47 1f7dA 136 45.53 b.85.4.1 28353 2e63A 170 46.38 2e0qA 104 46.49 2i6gA 199 46.58 c.66.1.44 137096 1mpuA 138 46.67 d.169.1.1 85040 2bwjA 199 46.84 2b79A 144 47.16 2eu8A 216 47.19 2pktA 91 47.89 1u5mA 73 48.55 g.27.1.2 113043 1tw4A 125 49.53 b.60.1.2 112690 2pbrA 195 52.50 2ozfA 92 52.59 2fr2A 172 53.38 b.60.1.8 133963 2zdrA 349 53.38 1xffA 240 53.78 d.153.1.1 109580 2ea7A 434 53.99 2o1qA 145 54.30 1n27A 96 55.40 b.34.9.2 91549 2cg4A 152 55.87 a.4.5.32,d.58.4.2 130417,130418 2bkrA 212 61.03 d.3.1.7 128710 1zhvA 134 61.21 d.58.18.8,d.58.18.8 125109,125110 1g9oA 91 61.37 b.36.1.1 60400 1zsoA 164 61.87 b.166.1.1 125610 2agcA 162 62.40 2ch4W 151 66.14 b.40.7.1 130451 1npeA 267 67.06 b.68.5.1 92032 1knmA 130 67.72 b.42.2.1 72781 1inlA 296 68.39 c.66.1.17 66220 1hw5A 210 69.87 a.4.5.4,b.82.3.2 16098,28137 2i5nH 258 71.55 b.41.1.1,f.23.10.1 137064,137065 2ocsA 88 72.50 1who 96 72.74 1ybyA 215 72.97 1i7nA 309 72.98 c.30.1.5,d.142.1.3 83681,83682 1lm5A 214 73.81 d.211.2.1 74029 2r78A 117 74.97 2pifA 276 75.35 1dvpA 220 75.48 a.118.9.2,g.50.1.1 19216,45358 1dunA 134 77.47 b.85.4.1 28371 1zpsA 138 77.98 b.168.1.1 125473 1bkf 107 79.26 2vp4A 230 79.62 2v90A 96 79.99 1q5hA 147 81.62 b.85.4.1 95893 1bkb 136 81.66 1m40A 263 81.85 e.3.1.1 74437 1xjcA 169 83.05 c.37.1.10 115387 1o8vA 134 83.31 b.60.1.2 86680 1omiA 248 83.53 b.82.3.3,a.4.5.4 87079,87080 1vm9A 111 83.94 b.33.1.1 108886 1abrB 267 84.10 b.42.2.1,b.42.2.1 25563,25564 1ol0A 121 84.49 b.1.1.1 93296 2e26A 725 84.80 1kg0C 136 85.02 d.169.1.1 72445 1w1hA 151 85.57 b.55.1.1 114076 1ojjA 402 88.16 b.29.1.10 93130 2g1lA 104 89.20 b.26.1.2 134520 2pagA 135 89.21