# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 2.23e-34 2o8jA 281 1.16e-33 2igqA 285 5.01e-33 3bo5A 290 8.17e-32 2r3aA 300 2.17e-31 2f69A 261 2.21e-30 b.76.2.1,b.85.7.1 133035,133036 1n6aA 259 2.78e-30 b.76.2.1,b.85.7.1 80121,80122 1ml9A 302 2.95e-30 b.85.7.1 79282 1zkkA 167 1.67e-29 2qpwA 149 4.22e-29 1n3jA 119 8.93e-22 b.85.7.2 79963 2h21A 440 1.34e-14 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 1.77e-12 a.166.1.1,b.85.7.3 87654,87655 1l8fA 207 0.4037 b.52.1.1 84537 2eng 210 0.4123 2p52A 196 1.068 2vphA 100 1.187 2a1hA 365 2.619 e.17.1.1 125997 2engA 210 3.011 b.52.1.1 26895 1ekfA 365 3.673 e.17.1.1 59445 2pcxA 220 4.500 2ag4A 164 4.660 b.95.1.1 126717 1gky 187 4.973 1z8fA 228 5.147 2j3hA 345 5.546 1iyeA 309 5.644 e.17.1.1 83786 1wrvA 308 6.688 2ag9A 164 7.600 1be9A 119 9.145 b.36.1.1 24774 2ns9A 157 9.752 2eiyA 308 9.779 2q3gA 89 11.01 1znwA 207 11.24 c.37.1.1 125412 1rutX 188 11.29 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2prvA 153 11.62 1v5lA 103 12.35 b.36.1.1 108378 1gpr 162 12.65 2de6A 392 12.69 b.33.1.2,d.129.3.3 131415,131416 1tr7A 164 13.08 b.2.3.2 119328 1a0gA 282 14.46 e.17.1.1 43276 1uwfA 158 14.96 b.2.3.2 119758 3daaA 277 15.08 e.17.1.1 43272 1nziA 159 15.30 b.23.1.1,g.3.11.1 86449,86450 2fwvA 226 17.14 2pktA 91 18.64 1uasA 362 18.72 b.71.1.1,c.1.8.1 88388,88389 1f3zA 161 19.15 b.84.3.1 28273 2p9oA 169 19.46 1sffA 426 19.53 c.67.1.4 105482 1f7zA 233 20.36 b.47.1.2 59681 1wmzA 140 21.80 d.169.1.1 109422 2bmwA 304 22.37 b.43.4.2,c.25.1.1 128815,128816 2yzuA 109 23.16 1gprA 162 23.55 b.84.3.1 28267 2gc1A 188 24.02 b.82.1.7 134928 2ozfA 92 24.10 1wcdJ 441 24.39 b.121.4.9 120887 2cvkA 110 24.51 1k2fA 190 24.78 b.8.1.2 68054 2fsaA 174 24.80 1thxA 115 24.85 c.47.1.1 32732 2ea7A 434 25.07 2coiA 386 25.20 1g9oA 91 25.53 b.36.1.1 60400 1vfyA 73 26.06 g.50.1.1 45357 2ac0A 200 27.14 b.2.5.2 126539 1mq7A 154 27.59 b.85.4.1 79404 1xuuA 349 29.66 b.85.1.1,c.1.10.6 116067,116068 1sixA 174 30.02 b.85.4.1 98892 1u5fA 148 30.45 b.55.1.1 119542 1hq8A 123 30.75 d.169.1.1 61127 1y7mA 164 30.81 b.160.1.1,d.7.1.1 122696,122697 1v6fA 151 32.99 d.109.1.2 108395 1gl4A 285 33.23 d.22.1.2,g.3.11.5 65286,65287 2apr 325 35.19 2ok8A 316 36.40 2i6gA 199 38.72 c.66.1.44 137096 1s68A 249 38.81 d.142.2.4 98591 2v90A 96 38.83 1zjkA 403 39.74 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 2ocsA 88 40.43 2de6D 115 40.45 1zhvA 134 40.71 d.58.18.8,d.58.18.8 125109,125110 1h9dA 134 41.26 b.2.5.6 60821 2a25A 193 42.69 1f7dA 136 43.33 b.85.4.1 28353 2e0qA 104 43.82 1v61A 132 44.06 b.55.1.1 108389 1wl7A 312 44.14 b.67.2.1 120996 1sjgA 112 44.33 b.33.1.1 105647 1nt2A 210 46.09 c.66.1.3 86149 1ojjA 402 46.16 b.29.1.10 93130 1qauA 112 46.37 b.36.1.1 24779 2pa1A 87 46.45 1g13A 162 46.51 b.95.1.1 60194 1u5mA 73 46.83 g.27.1.2 113043 2qkdA 404 48.76 1xffA 240 48.92 d.153.1.1 109580 2plrA 213 50.26 1n7eA 97 51.45 b.36.1.1 91691 2oo4A 234 52.50 2bwjA 199 52.78 2b79A 144 53.07 2eu8A 216 54.23 2e63A 170 55.08 2cg4A 152 55.12 a.4.5.32,d.58.4.2 130417,130418 1onqA 283 56.60 b.1.1.2,d.19.1.1 93365,93366 1gy7A 125 56.60 d.17.4.2 70738 3bpuA 88 56.99 2egoA 96 57.37 2pbrA 195 57.38 2biqA 219 57.52 1uypA 432 60.91 b.29.1.19,b.67.2.3 100176,100177 1lm5A 214 62.21 d.211.2.1 74029 2i5nH 258 62.32 b.41.1.1,f.23.10.1 137064,137065 1qavA 90 63.61 b.36.1.1 24777 2qtsA 438 64.53 1wf7A 103 66.58 b.36.1.1 114577 1kg0C 136 68.47 d.169.1.1 72445 1wu2A 396 68.54 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 2o1qA 145 68.84 1inlA 296 69.65 c.66.1.17 66220 1kqfA 1015 70.15 b.52.2.2,c.81.1.1 72871,72872 1qf9A 194 70.57 c.37.1.1 31848 1dvpA 220 70.60 a.118.9.2,g.50.1.1 19216,45358 1dymA 402 70.82 b.29.1.10 24304 1m40A 263 71.38 e.3.1.1 74437 1yk3A 210 72.65 d.108.1.1 123493 1dunA 134 73.52 b.85.4.1 28371 2pifA 276 73.69 2fr2A 172 73.81 b.60.1.8 133963 2vp4A 230 74.22 2e26A 725 74.92 1g8kB 133 75.56 b.33.1.1 24435 1kbpA 432 78.91 b.1.12.1,d.159.1.1 22349,42068 1o54A 277 79.15 c.66.1.13 92482 2zdrA 349 79.83 1s31A 273 81.95 1yo8A 634 82.09 1bkf 107 83.93 1abrB 267 84.50 b.42.2.1,b.42.2.1 25563,25564 1rmd 116 86.02 2ac1A 541 86.20 2g1lA 104 87.54 b.26.1.2 134520 2hft 218 87.96 2r78A 117 87.96 2he4A 90 88.67 2qdlA 165 89.32 1auvA 311 89.87 c.30.1.5,d.142.1.3 31723,41558 1u5xA 140 89.91 b.22.1.1 113055 1q3oA 109 89.95 b.36.1.1 95700