# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 2.06e-35 2o8jA 281 1.08e-34 2igqA 285 4.49e-34 3bo5A 290 8.83e-33 2r3aA 300 3.08e-32 2f69A 261 1.84e-31 b.76.2.1,b.85.7.1 133035,133036 1n6aA 259 2.26e-31 b.76.2.1,b.85.7.1 80121,80122 1ml9A 302 5.66e-31 b.85.7.1 79282 1zkkA 167 1.97e-30 2qpwA 149 4.45e-30 1n3jA 119 1.85e-22 b.85.7.2 79963 2h21A 440 6.55e-15 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 5.09e-13 a.166.1.1,b.85.7.3 87654,87655 1l8fA 207 0.2167 b.52.1.1 84537 2eng 210 0.2406 2p52A 196 0.7675 2vphA 100 1.093 2engA 210 1.725 b.52.1.1 26895 2pcxA 220 2.816 2a1hA 365 3.341 e.17.1.1 125997 2ag4A 164 3.986 b.95.1.1 126717 2j3hA 345 4.393 1iyeA 309 4.562 e.17.1.1 83786 1gky 187 4.712 1ekfA 365 4.775 e.17.1.1 59445 1z8fA 228 5.366 1wrvA 308 5.528 2ag9A 164 6.157 2eiyA 308 8.153 1gpr 162 9.811 1be9A 119 9.939 b.36.1.1 24774 2ns9A 157 10.29 1znwA 207 10.34 c.37.1.1 125412 1v5lA 103 10.42 b.36.1.1 108378 1nziA 159 10.81 b.23.1.1,g.3.11.1 86449,86450 2prvA 153 11.45 1a0gA 282 11.58 e.17.1.1 43276 2q3gA 89 12.11 3daaA 277 12.77 e.17.1.1 43272 1rutX 188 13.04 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1tr7A 164 14.71 b.2.3.2 119328 2bmwA 304 14.86 b.43.4.2,c.25.1.1 128815,128816 1uwfA 158 15.58 b.2.3.2 119758 1xuuA 349 15.62 b.85.1.1,c.1.10.6 116067,116068 1sffA 426 15.68 c.67.1.4 105482 2de6A 392 16.45 b.33.1.2,d.129.3.3 131415,131416 2p9oA 169 16.88 1uasA 362 16.96 b.71.1.1,c.1.8.1 88388,88389 1wmzA 140 17.04 d.169.1.1 109422 2ok8A 316 17.13 2pktA 91 17.15 1f3zA 161 18.05 b.84.3.1 28273 1gprA 162 18.34 b.84.3.1 28267 2apr 325 19.30 1vfyA 73 20.29 g.50.1.1 45357 1f7zA 233 21.64 b.47.1.2 59681 1mq7A 154 22.05 b.85.4.1 79404 1wcdJ 441 22.39 b.121.4.9 120887 2gc1A 188 22.93 b.82.1.7 134928 1y7mA 164 23.39 b.160.1.1,d.7.1.1 122696,122697 1v6fA 151 24.30 d.109.1.2 108395 2ac0A 200 24.59 b.2.5.2 126539 1g9oA 91 25.40 b.36.1.1 60400 2yzuA 109 25.88 1sixA 174 25.90 b.85.4.1 98892 2fsaA 174 26.60 2ozfA 92 26.89 1hq8A 123 26.89 d.169.1.1 61127 2fwvA 226 26.98 2cvkA 110 27.41 1gl4A 285 28.63 d.22.1.2,g.3.11.5 65286,65287 1u5fA 148 28.98 b.55.1.1 119542 1zhvA 134 29.91 d.58.18.8,d.58.18.8 125109,125110 1thxA 115 30.12 c.47.1.1 32732 1ojjA 402 30.99 b.29.1.10 93130 1g13A 162 32.27 b.95.1.1 60194 1h9dA 134 33.87 b.2.5.6 60821 1zjkA 403 34.91 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 1wl7A 312 35.02 b.67.2.1 120996 2a25A 193 37.74 1s68A 249 38.18 d.142.2.4 98591 2ocsA 88 38.18 1sjgA 112 38.61 b.33.1.1 105647 1u5mA 73 38.71 g.27.1.2 113043 1lm5A 214 38.95 d.211.2.1 74029 2v90A 96 39.45 2eu8A 216 39.61 2plrA 213 40.24 2ea7A 434 41.39 2bwjA 199 41.72 1inlA 296 42.33 c.66.1.17 66220 1f7dA 136 42.96 b.85.4.1 28353 2coiA 386 43.60 2pbrA 195 43.67 1v61A 132 43.94 b.55.1.1 108389 1uypA 432 44.05 b.29.1.19,b.67.2.3 100176,100177 2qkdA 404 45.12 3bpuA 88 45.39 2biqA 219 45.71 2pa1A 87 46.07 1onqA 283 47.08 b.1.1.2,d.19.1.1 93365,93366 2e63A 170 47.28 1k2fA 190 47.33 b.8.1.2 68054 2de6D 115 47.66 2qtsA 438 48.20 1qauA 112 48.39 b.36.1.1 24779 1wu2A 396 49.47 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 2b79A 144 49.51 2zdrA 349 51.11 2hft 218 51.67 1dymA 402 52.56 b.29.1.10 24304 2e0qA 104 52.89 1n7eA 97 53.01 b.36.1.1 91691 1m40A 263 54.68 e.3.1.1 74437 1kqfA 1015 54.78 b.52.2.2,c.81.1.1 72871,72872 1nt2A 210 56.43 c.66.1.3 86149 2i6gA 199 56.87 c.66.1.44 137096 1dvpA 220 57.23 a.118.9.2,g.50.1.1 19216,45358 1qf9A 194 57.32 c.37.1.1 31848 1gy7A 125 57.77 d.17.4.2 70738 2egoA 96 58.05 1dunA 134 60.50 b.85.4.1 28371 1s31A 273 63.41 2i5nH 258 63.51 b.41.1.1,f.23.10.1 137064,137065 2vp4A 230 63.55 1qavA 90 63.67 b.36.1.1 24777 2ac1A 541 64.88 2oo4A 234 65.70 1wf7A 103 68.26 b.36.1.1 114577 2cg4A 152 68.29 a.4.5.32,d.58.4.2 130417,130418 1auvA 311 69.79 c.30.1.5,d.142.1.3 31723,41558 1o54A 277 69.79 c.66.1.13 92482 1abrB 267 70.80 b.42.2.1,b.42.2.1 25563,25564 1q5hA 147 71.18 b.85.4.1 95893 2iwoA 120 71.23 2e26A 725 71.37 2pifA 276 74.67 2bkrA 212 75.05 d.3.1.7 128710 1kbpA 432 75.27 b.1.12.1,d.159.1.1 22349,42068 2r78A 117 76.32 1yo8A 634 76.79 2fr2A 172 77.01 b.60.1.8 133963 1kg0C 136 77.36 d.169.1.1 72445 1mpuA 138 77.39 d.169.1.1 85040 1bkf 107 77.69 2g1lA 104 78.22 b.26.1.2 134520 3c1aA 315 78.59 2o1qA 145 78.86 1eo9A 209 80.36 b.3.6.1 22731 1hw5A 210 83.18 a.4.5.4,b.82.3.2 16098,28137 2ol1A 147 84.81 2yreA 100 85.62 2gumA 628 85.65 2he4A 90 87.44 1zsoA 164 89.01 b.166.1.1 125610