# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 2.60e-37 2o8jA 281 2.79e-36 2igqA 285 7.78e-36 3bo5A 290 2.49e-34 2r3aA 300 2.84e-34 1ml9A 302 1.47e-32 b.85.7.1 79282 2f69A 261 2.72e-32 b.76.2.1,b.85.7.1 133035,133036 1zkkA 167 3.22e-32 1n6aA 259 9.84e-32 b.76.2.1,b.85.7.1 80121,80122 2qpwA 149 1.24e-31 1n3jA 119 1.39e-22 b.85.7.2 79963 2h21A 440 1.69e-14 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 2.69e-14 a.166.1.1,b.85.7.3 87654,87655 2vphA 100 0.2740 2p52A 196 0.3974 1be9A 119 1.134 b.36.1.1 24774 2pcxA 220 1.423 2gh1A 301 1.749 c.66.1.49 135170 1qauA 112 2.763 b.36.1.1 24779 2p9oA 169 3.200 2q3gA 89 3.677 1f7zA 233 3.692 b.47.1.2 59681 1qavA 90 3.775 b.36.1.1 24777 2fsaA 174 5.478 1v5lA 103 5.540 b.36.1.1 108378 1iyeA 309 6.073 e.17.1.1 83786 2ac0A 200 6.475 b.2.5.2 126539 2ozfA 92 6.580 2v90A 96 7.062 2he2A 102 7.137 1gky 187 7.192 1g9oA 91 7.400 b.36.1.1 60400 2ag4A 164 7.702 b.95.1.1 126717 1wf7A 103 8.145 b.36.1.1 114577 2egoA 96 8.913 2prvA 153 9.133 2cg4A 152 9.253 a.4.5.32,d.58.4.2 130417,130418 2i1nA 102 9.459 1yk3A 210 10.71 d.108.1.1 123493 2h2bA 107 10.81 2pbrA 195 11.16 1nf3C 128 11.62 b.36.1.1 85596 1a0gA 282 11.67 e.17.1.1 43276 1a5zA 319 12.14 c.2.1.5,d.162.1.1 30181,42148 2pktA 91 12.14 1q3oA 109 12.99 b.36.1.1 95700 2ag9A 164 13.01 1wrvA 308 13.28 2bazA 142 13.33 2eiyA 308 13.68 2iwoA 120 13.83 1vfyA 73 14.54 g.50.1.1 45357 1sixA 174 14.60 b.85.4.1 98892 1gpr 162 15.34 1n7eA 97 15.55 b.36.1.1 91691 1f7dA 136 15.92 b.85.4.1 28353 3bpuA 88 16.45 1tp5A 119 17.14 b.36.1.1 119305 2jilA 97 17.37 2j21A 219 17.70 1mfgA 95 17.74 b.36.1.1 79043 2pa1A 87 17.76 1l6oA 95 17.89 b.36.1.1 84534 2fcfA 103 18.35 b.36.1.1 133267 2f0aA 98 18.75 b.36.1.1 132661 1u5mA 73 18.77 g.27.1.2 113043 1f3zA 161 18.98 b.84.3.1 28273 2yreA 100 21.07 3daaA 277 21.07 e.17.1.1 43272 1sr2A 116 21.84 a.24.10.4 112109 2h3lA 103 21.88 b.36.1.1 136046 1hq8A 123 21.90 d.169.1.1 61127 2ol1A 147 22.22 1mq7A 154 22.25 b.85.4.1 79404 1kwaA 88 22.37 b.36.1.1 24772 2plrA 213 22.60 1nt2A 210 22.62 c.66.1.3 86149 2ct9A 208 22.97 1qf9A 194 23.06 c.37.1.1 31848 2e63A 170 23.31 2q9vA 90 23.48 1xuuA 349 24.67 b.85.1.1,c.1.10.6 116067,116068 2i04A 85 24.80 1vlyA 338 24.89 b.44.2.1,d.250.1.1 108871,108872 2ocsA 88 24.89 1wmzA 140 25.04 d.169.1.1 109422 1zpsA 138 25.53 b.168.1.1 125473 1q5hA 147 25.55 b.85.4.1 95893 1rutX 188 25.62 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1nmoA 247 25.86 c.135.1.1 91980 2reyA 100 26.17 1lm5A 214 27.23 d.211.2.1 74029 2awxA 105 27.52 2v7pA 310 27.57 1gprA 162 27.69 b.84.3.1 28267 1dunA 134 30.00 b.85.4.1 28371 2he4A 90 30.13 2biqA 219 30.67 1whmA 92 32.58 b.34.10.1 114647 2rczA 81 32.80 2opgA 98 33.22 1uwfA 158 33.33 b.2.3.2 119758 2ioiA 201 33.90 2fe5A 94 36.70 b.36.1.1 133323 2gzvA 114 37.43 2o1qA 145 37.64 2fneA 117 38.00 b.36.1.1 133813 2rgxA 206 38.76 2jikA 101 39.71 1u5fA 148 39.72 b.55.1.1 119542 1vh0A 161 39.93 c.116.1.3 100626 2yzuA 109 40.47 1htqA 477 40.53 d.15.9.1,d.128.1.1 71035,71036 2uzcA 88 41.14 1y97A 238 41.86 c.55.3.5 122773 1hzpA 335 42.45 c.95.1.2,c.95.1.2 61455,61456 1ihjA 98 42.84 b.36.1.1 62382 2qdlA 165 43.17 2qg1A 92 43.55 2cvkA 110 43.72 2ebdA 309 44.45 2i6gA 199 45.40 c.66.1.44 137096 1sffA 426 46.05 c.67.1.4 105482 1f7sA 139 47.04 d.109.1.2 40857 2iwnA 97 47.15 1tr7A 164 47.26 b.2.3.2 119328 1tz9A 367 47.83 c.1.15.6 107466 2ovxA 159 49.12 d.92.1.11 139388 2f5yA 91 50.05 b.36.1.1 133015 1k2fA 190 50.69 b.8.1.2 68054 1gtvA 214 51.27 c.37.1.1 70537 1znwA 207 51.98 c.37.1.1 125412 2eng 210 52.13 2a1hA 365 52.40 e.17.1.1 125997 1yghA 164 52.57 d.108.1.1 40802 2eu8A 216 53.35 1vid 221 53.99 2ga9D 469 54.96 1h9dA 134 55.64 b.2.5.6 60821 1hg7A 66 55.79 b.85.1.1 28280 2coiA 386 58.72 2a6hD 1524 58.96 e.29.1.2 126265 1ow1A 195 59.64 b.131.1.3 93625 1hj9A 226 59.74 b.47.1.2 65845 2j7yA 255 60.31 a.123.1.1 138130 1rylA 167 61.07 d.276.1.1 105124 1z8fA 228 61.23 1thxA 115 61.84 c.47.1.1 32732 3ullA 132 62.49 b.40.4.3 25282 1v61A 132 63.27 b.55.1.1 108389 1bqyA 234 64.23 b.47.1.2 26332 1ucsA 64 64.33 b.85.1.1 88466 2qkvA 96 64.74 2rieA 160 65.26 1zowA 313 65.63 1s31A 273 65.93 2p41A 305 66.19 2ho9A 167 66.87 2djkA 133 67.38 c.47.1.2 131548 1tn3A 137 69.02 d.169.1.1 42423 1ekfA 365 69.33 e.17.1.1 59445 1xkuA 330 71.14 c.10.2.7 115425 1yo8A 634 72.28 2dbbA 151 73.59 2p7iA 250 73.72 2hft 218 74.42 2oo4A 234 77.09 1h1dA 221 77.34 c.66.1.1 83452 2bwjA 199 78.12 1vyqA 173 79.29 b.85.4.1 120548 3c1aA 315 80.31 2hwkA 320 80.60 2bkrA 212 84.99 d.3.1.7 128710 1mmqA 170 86.80 d.92.1.11 40396 2g64A 140 86.94 d.96.1.2 134694 2a4nA 182 86.99 d.108.1.1 126159 1ltqA 301 87.55 c.108.1.9,c.37.1.1 78208,78209