# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 1.60e-37 2o8jA 281 2.49e-36 2igqA 285 4.37e-36 3bo5A 290 7.83e-35 2r3aA 300 2.14e-34 2f69A 261 5.95e-33 b.76.2.1,b.85.7.1 133035,133036 1ml9A 302 6.06e-33 b.85.7.1 79282 1n6aA 259 7.68e-33 b.76.2.1,b.85.7.1 80121,80122 2qpwA 149 2.06e-32 1zkkA 167 2.33e-32 1n3jA 119 2.07e-23 b.85.7.2 79963 2h21A 440 2.45e-15 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 1.74e-13 a.166.1.1,b.85.7.3 87654,87655 2p52A 196 0.6035 2eng 210 1.177 1l8fA 207 1.186 b.52.1.1 84537 2vphA 100 1.259 2pcxA 220 1.633 2ag4A 164 1.937 b.95.1.1 126717 2prvA 153 2.455 1ekfA 365 3.128 e.17.1.1 59445 2a1hA 365 3.202 e.17.1.1 125997 2ag9A 164 3.257 2engA 210 3.981 b.52.1.1 26895 1gky 187 4.053 1k2fA 190 4.490 b.8.1.2 68054 1iyeA 309 4.686 e.17.1.1 83786 1z8fA 228 4.934 1wrvA 308 5.640 1hq8A 123 5.713 d.169.1.1 61127 1v5lA 103 5.719 b.36.1.1 108378 1gpr 162 7.515 2ac0A 200 8.566 b.2.5.2 126539 1be9A 119 8.589 b.36.1.1 24774 2eiyA 308 8.721 1nziA 159 9.118 b.23.1.1,g.3.11.1 86449,86450 1znwA 207 10.07 c.37.1.1 125412 3daaA 277 10.75 e.17.1.1 43272 1rutX 188 11.24 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2coiA 386 11.46 1u5fA 148 11.59 b.55.1.1 119542 1uasA 362 11.72 b.71.1.1,c.1.8.1 88388,88389 1wmzA 140 12.00 d.169.1.1 109422 1yk3A 210 12.33 d.108.1.1 123493 1gprA 162 12.42 b.84.3.1 28267 2de6A 392 13.31 b.33.1.2,d.129.3.3 131415,131416 1a0gA 282 13.57 e.17.1.1 43276 2ns9A 157 14.06 1vfyA 73 14.92 g.50.1.1 45357 1f3zA 161 15.11 b.84.3.1 28273 2a25A 193 17.76 2apr 325 21.04 2o1qA 145 21.23 2yzuA 109 21.45 2de6D 115 21.64 1y7mA 164 21.82 b.160.1.1,d.7.1.1 122696,122697 1auvA 311 22.41 c.30.1.5,d.142.1.3 31723,41558 1onqA 283 22.50 b.1.1.2,d.19.1.1 93365,93366 1wl7A 312 22.52 b.67.2.1 120996 1zpsA 138 24.14 b.168.1.1 125473 2fwvA 226 25.19 2q3gA 89 26.36 1uwfA 158 27.21 b.2.3.2 119758 1n7eA 97 27.42 b.36.1.1 91691 2cvkA 110 27.85 1g9oA 91 28.04 b.36.1.1 60400 2p9oA 169 28.28 1mpuA 138 28.78 d.169.1.1 85040 1g13A 162 28.90 b.95.1.1 60194 1eo9A 209 29.78 b.3.6.1 22731 2j3hA 345 30.00 1kqfA 1015 30.22 b.52.2.2,c.81.1.1 72871,72872 1u5mA 73 30.50 g.27.1.2 113043 1i7nA 309 30.83 c.30.1.5,d.142.1.3 83681,83682 1sffA 426 31.00 c.67.1.4 105482 2e63A 170 31.09 2biqA 219 32.22 2ozfA 92 32.68 1xuuA 349 32.74 b.85.1.1,c.1.10.6 116067,116068 1uypA 432 33.71 b.29.1.19,b.67.2.3 100176,100177 1tr7A 164 34.48 b.2.3.2 119328 1v61A 132 35.97 b.55.1.1 108389 2e0qA 104 36.37 1zjkA 403 37.28 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 3cngA 189 37.89 2qdlA 165 38.35 1vlyA 338 39.36 b.44.2.1,d.250.1.1 108871,108872 1thxA 115 43.31 c.47.1.1 32732 1wcdJ 441 43.91 b.121.4.9 120887 1who 96 44.95 2bmwA 304 45.09 b.43.4.2,c.25.1.1 128815,128816 2bkrA 212 45.40 d.3.1.7 128710 1lm5A 214 45.60 d.211.2.1 74029 1sz6B 263 46.46 b.42.2.1,b.42.2.1 112172,112173 1dvpA 220 47.11 a.118.9.2,g.50.1.1 19216,45358 2pktA 91 48.14 1sixA 174 48.66 b.85.4.1 98892 3c1aA 315 49.31 1zhvA 134 49.31 d.58.18.8,d.58.18.8 125109,125110 1bkb 136 49.43 2ho9A 167 50.35 1qo3C 137 51.57 d.169.1.1 42350 2fr2A 172 52.42 b.60.1.8 133963 1ca1A 370 53.26 a.124.1.1,b.12.1.3 19340,23648 1sjgA 112 53.38 b.33.1.1 105647 1qauA 112 54.17 b.36.1.1 24779 1w1hA 151 54.65 b.55.1.1 114076 2plrA 213 55.21 1gy7A 125 55.23 d.17.4.2 70738 1f7zA 233 55.45 b.47.1.2 59681 1mq7A 154 55.56 b.85.4.1 79404 1m40A 263 56.70 e.3.1.1 74437 2ac1A 541 56.81 1wf7A 103 57.53 b.36.1.1 114577 1ol0A 121 57.67 b.1.1.1 93296 2egoA 96 57.69 1yo8A 634 57.85 2ovxA 159 58.18 d.92.1.11 139388 1e87A 118 58.40 d.169.1.1 42327 2ch4W 151 59.98 b.40.7.1 130451 3c0dA 119 60.07 1a2vA 655 60.56 b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 2j21A 219 61.12 1h9dA 134 61.41 b.2.5.6 60821 2a13A 166 63.48 b.60.1.8 125971 2v90A 96 63.55 2oe3A 114 64.24 2i7fA 108 64.86 2ioiA 201 66.66 2iwoA 120 69.48 1npeA 267 69.87 b.68.5.1 92032 1whoA 96 70.27 b.7.3.1 23215 2ocsA 88 70.32 2vp4A 230 70.46 3bpuA 88 70.81 2e26A 725 71.70 1n27A 96 72.53 b.34.9.2 91549 1kg0C 136 72.61 d.169.1.1 72445 1zowA 313 73.28 1p5zB 263 75.04 c.37.1.1 87815 2gy5A 423 76.74 2z62A 276 76.83 2yreA 100 76.93 1xkuA 330 78.06 c.10.2.7 115425 1gl4A 285 79.26 d.22.1.2,g.3.11.5 65286,65287 2i6gA 199 79.55 c.66.1.44 137096 2iiaA 131 80.26 2v9tB 220 80.74 2qkdA 404 81.32 1v6fA 151 82.10 d.109.1.2 108395 2f1lA 187 82.39 b.41.1.4,b.43.3.4 132780,132781 1u1zA 168 82.64 d.38.1.6 107602 2zblA 421 84.24 2v72A 143 85.76 2zdrA 349 86.06 2gc1A 188 86.29 b.82.1.7 134928 2agcA 162 87.20 1rl2A 137 87.32 b.34.5.3,b.40.4.5 24610,25342 1qavA 90 88.34 b.36.1.1 24777 2napA 723 88.53 b.52.2.2,c.81.1.1 26926,35334