# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 4.88e-23 2o8jA 281 8.48e-23 2igqA 285 2.58e-22 2r3aA 300 1.49e-21 3bo5A 290 2.46e-21 1ml9A 302 3.73e-20 b.85.7.1 79282 2f69A 261 5.90e-20 b.76.2.1,b.85.7.1 133035,133036 1n6aA 259 6.45e-20 b.76.2.1,b.85.7.1 80121,80122 1zkkA 167 1.50e-19 2qpwA 149 2.19e-19 1n3jA 119 6.46e-14 b.85.7.2 79963 2h21A 440 2.10e-09 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 3.79e-07 a.166.1.1,b.85.7.3 87654,87655 1htyA 1015 1.502 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 2nutA 769 2.776 2a9gA 418 4.529 d.126.1.4 126435 1ux6A 350 5.439 b.29.1.16,g.75.1.1 100145,100146 2j3hA 345 6.242 2qtsA 438 7.825 1uasA 362 10.77 b.71.1.1,c.1.8.1 88388,88389 1zodA 433 12.34 c.67.1.4 125437 1bf2 750 12.65 1ecfA 504 14.41 c.61.1.1,d.153.1.1 34053,41820 1jofA 365 14.60 b.69.10.1 71775 1poxA 585 15.16 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1p80A 753 15.38 c.23.16.3,e.5.1.1 94337,94338 2qzuA 491 17.17 2uvfA 608 17.56 2basA 431 17.62 c.1.33.1,d.110.6.2 128244,128245 1ji1A 637 18.04 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 2oo4A 234 19.83 1wcdJ 441 21.11 b.121.4.9 120887 1kblA 873 21.24 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 2eng 210 22.76 2vphA 100 23.15 1bf2A 750 23.16 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1u3wA 374 25.32 b.35.1.2,c.2.1.1 113013,113014 1oyjA 231 29.34 a.45.1.1,c.47.1.5 87597,87598 2e26A 725 29.40 1vlyA 338 31.20 b.44.2.1,d.250.1.1 108871,108872 2i5nH 258 31.71 b.41.1.1,f.23.10.1 137064,137065 1d3cA 686 31.77 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2ea7A 434 33.77 1l8fA 207 34.30 b.52.1.1 84537 1v4vA 376 34.75 c.87.1.3 100313 2coiA 386 34.84 2rduA 387 35.56 1u5uA 374 37.34 e.5.1.2 113052 2drhA 361 40.43 1pamA 686 40.52 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 1ct9A 553 40.69 c.26.2.1,d.153.1.1 31616,41834 1p42A 270 43.55 d.14.1.7,d.14.1.7 87754,87755 2o8bA 934 43.76 1q4gA 553 43.81 a.93.1.2,g.3.11.1 95789,95790 1yp2A 451 43.83 b.81.1.4,c.68.1.6 123798,123799 1q33A 292 44.25 d.113.1.1 95657 1p0fA 373 44.75 b.35.1.2,c.2.1.1 87642,87643 2pifA 276 45.44 1r42A 615 45.86 d.92.1.5 96968 1qbkB 890 46.60 a.118.1.1 19127 2ns9A 157 46.61 2nt0A 497 48.83 b.71.1.2,c.1.8.3 138561,138562 1eg5A 384 49.37 c.67.1.3 34429 2p52A 196 50.72 2a25A 193 50.90 2a1hA 365 51.38 e.17.1.1 125997 1wkrA 340 51.66 b.50.1.2 109395 1c30B 382 53.10 c.8.3.1,c.23.16.1 30736,31413 1ooyA 481 53.11 c.124.1.3,c.124.1.2 93388,93389 2b5nA 323 54.19 1k0fA 277 57.66 c.92.2.2 71974 1gkrA 458 57.86 b.92.1.3,c.1.9.6 70251,70252 1z5hA 780 58.63 1vblA 416 59.24 1satA 471 60.25 b.80.7.1,d.92.1.6 28014,40300 2bgiA 272 61.37 1v5lA 103 64.21 b.36.1.1 108378 2engA 210 65.11 b.52.1.1 26895 1ekfA 365 66.72 e.17.1.1 59445 2prvA 153 67.32 2guyA 478 68.10 b.71.1.1,c.1.8.1 135754,135755 1wraA 308 69.25 d.157.1.8 121190 2ha9A 446 70.01 2pq8A 278 70.39 1fcdA 401 73.98 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 2gagA 965 77.20 1fy7A 278 77.66 d.108.1.1 40817 1qwnA 1045 79.20 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2gsoA 393 79.63 2nu8B 388 80.69 1n7vA 555 81.44 b.126.1.1 85377 1c8zA 265 81.65 d.23.1.1 38375 2df7A 458 82.61 b.121.4.9 131449 1gteA 1025 84.92 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1znwA 207 85.44 c.37.1.1 125412 2b8nA 429 86.43 c.118.1.1 128093 1abrB 267 86.80 b.42.2.1,b.42.2.1 25563,25564 1k55A 246 87.95 e.3.1.1 68156 1jv2B 692 88.01 b.1.15.1,c.62.1.1,d.200.1.1,g.3.11.6,g.3.11.6 67338,67339,67340,67341,67342 2z8gA 549 88.30 1tb3A 352 89.36 c.1.4.1 119205 2apr 325 89.92