# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 3.39e-35 2o8jA 281 3.18e-34 2igqA 285 5.17e-34 3bo5A 290 1.23e-32 2r3aA 300 2.18e-32 2f69A 261 3.64e-31 b.76.2.1,b.85.7.1 133035,133036 1ml9A 302 4.46e-31 b.85.7.1 79282 1n6aA 259 5.81e-31 b.76.2.1,b.85.7.1 80121,80122 1zkkA 167 2.74e-30 2qpwA 149 2.90e-30 1n3jA 119 3.05e-22 b.85.7.2 79963 2h21A 440 2.09e-14 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 1.13e-12 a.166.1.1,b.85.7.3 87654,87655 2vphA 100 0.8218 2p52A 196 1.196 1l8fA 207 1.204 b.52.1.1 84537 2eng 210 1.257 2pcxA 220 2.715 1gky 187 3.011 2a1hA 365 3.406 e.17.1.1 125997 1ekfA 365 3.622 e.17.1.1 59445 1be9A 119 4.902 b.36.1.1 24774 2engA 210 5.012 b.52.1.1 26895 1v5lA 103 5.116 b.36.1.1 108378 1iyeA 309 6.019 e.17.1.1 83786 1gpr 162 6.572 2ag4A 164 6.820 b.95.1.1 126717 2ag9A 164 7.604 1rutX 188 7.619 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1wrvA 308 7.629 2prvA 153 8.133 1z8fA 228 8.657 1hq8A 123 10.23 d.169.1.1 61127 2ns9A 157 10.40 1nziA 159 10.78 b.23.1.1,g.3.11.1 86449,86450 2eiyA 308 11.12 1gprA 162 11.13 b.84.3.1 28267 1uwfA 158 11.41 b.2.3.2 119758 1vfyA 73 11.63 g.50.1.1 45357 1tr7A 164 12.14 b.2.3.2 119328 1f3zA 161 12.20 b.84.3.1 28273 2fwvA 226 13.25 1wmzA 140 13.91 d.169.1.1 109422 2apr 325 14.07 1a0gA 282 14.52 e.17.1.1 43276 3daaA 277 14.62 e.17.1.1 43272 2q3gA 89 15.18 2coiA 386 17.31 1znwA 207 17.65 c.37.1.1 125412 1k2fA 190 19.20 b.8.1.2 68054 2ac0A 200 19.58 b.2.5.2 126539 1u5fA 148 19.87 b.55.1.1 119542 2j3hA 345 20.09 1onqA 283 22.65 b.1.1.2,d.19.1.1 93365,93366 2de6A 392 22.79 b.33.1.2,d.129.3.3 131415,131416 1g9oA 91 22.91 b.36.1.1 60400 2a25A 193 23.59 1u5mA 73 25.64 g.27.1.2 113043 1wcdJ 441 25.66 b.121.4.9 120887 2bmwA 304 25.75 b.43.4.2,c.25.1.1 128815,128816 1xuuA 349 26.08 b.85.1.1,c.1.10.6 116067,116068 2ozfA 92 26.22 1zhvA 134 27.70 d.58.18.8,d.58.18.8 125109,125110 1zjkA 403 28.20 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 2pktA 91 29.39 2ovxA 159 29.99 d.92.1.11 139388 2p9oA 169 30.48 1ojjA 402 30.63 b.29.1.10 93130 2yzuA 109 30.79 1sffA 426 30.88 c.67.1.4 105482 1n7eA 97 31.50 b.36.1.1 91691 2o1qA 145 31.73 2plrA 213 33.29 1y7mA 164 33.49 b.160.1.1,d.7.1.1 122696,122697 1v61A 132 34.07 b.55.1.1 108389 1qauA 112 35.05 b.36.1.1 24779 1g13A 162 36.62 b.95.1.1 60194 3bpuA 88 37.86 1kqfA 1015 38.14 b.52.2.2,c.81.1.1 72871,72872 2gc1A 188 38.45 b.82.1.7 134928 1f7zA 233 38.72 b.47.1.2 59681 1m40A 263 39.70 e.3.1.1 74437 1mmqA 170 40.23 d.92.1.11 40396 1yk3A 210 40.26 d.108.1.1 123493 2cvkA 110 41.00 1mpuA 138 41.75 d.169.1.1 85040 1mq7A 154 41.88 b.85.4.1 79404 1qavA 90 42.22 b.36.1.1 24777 1sixA 174 42.57 b.85.4.1 98892 2cg4A 152 43.01 a.4.5.32,d.58.4.2 130417,130418 1thxA 115 43.24 c.47.1.1 32732 1dvpA 220 43.94 a.118.9.2,g.50.1.1 19216,45358 1h9dA 134 44.09 b.2.5.6 60821 1gl4A 285 44.27 d.22.1.2,g.3.11.5 65286,65287 3cngA 189 44.43 2egoA 96 45.72 2e0qA 104 46.37 2e63A 170 48.19 1uasA 362 48.75 b.71.1.1,c.1.8.1 88388,88389 2v90A 96 48.99 1v6fA 151 49.82 d.109.1.2 108395 1zpsA 138 50.41 b.168.1.1 125473 1yo8A 634 50.43 2biqA 219 50.91 2de6D 115 51.17 1qf9A 194 51.85 c.37.1.1 31848 1vlyA 338 51.95 b.44.2.1,d.250.1.1 108871,108872 2qdlA 165 52.27 2ocsA 88 53.71 1wf7A 103 53.89 b.36.1.1 114577 1kbpA 432 54.28 b.1.12.1,d.159.1.1 22349,42068 1eo9A 209 55.58 b.3.6.1 22731 1auvA 311 56.83 c.30.1.5,d.142.1.3 31723,41558 2e26A 725 57.05 2iwoA 120 57.09 2pa1A 87 57.10 2pifA 276 57.28 2yreA 100 58.34 1who 96 59.51 2fsaA 174 59.77 2vp4A 230 62.61 1wu2A 396 64.46 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 1s68A 249 64.56 d.142.2.4 98591 1f7dA 136 64.74 b.85.4.1 28353 1ol0A 121 64.81 b.1.1.1 93296 1dymA 402 65.02 b.29.1.10 24304 2pbrA 195 67.44 1a2vA 655 67.61 b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 2ch4W 151 68.97 b.40.7.1 130451 1te5A 257 69.31 d.153.1.1 106795 2ea7A 434 70.08 2ok8A 316 70.21 2qkdA 404 70.46 1gy7A 125 70.65 d.17.4.2 70738 2oemA 413 71.57 2bwjA 199 73.18 1tp5A 119 74.72 b.36.1.1 119305 2zdrA 349 75.70 1s31A 273 76.11 2ho9A 167 76.23 2jixB 225 76.90 1p5zB 263 77.41 c.37.1.1 87815 2he2A 102 78.66 2gy5A 423 79.63 2qntA 141 80.56 1sjgA 112 81.58 b.33.1.1 105647 1q5hA 147 82.63 b.85.4.1 95893 1lm5A 214 83.44 d.211.2.1 74029 2z62A 276 87.59 1q3oA 109 88.56 b.36.1.1 95700 2gkpA 167 88.77 1x6mA 196 89.01 b.88.1.4 114920 1zsoA 164 89.03 b.166.1.1 125610 1kg0C 136 89.34 d.169.1.1 72445 1zc3B 113 89.82 b.55.1.1 124881