# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 4.39e-40 2o8jA 281 2.89e-39 2igqA 285 1.84e-38 3bo5A 290 5.37e-37 2r3aA 300 1.61e-36 2f69A 261 1.34e-35 b.76.2.1,b.85.7.1 133035,133036 1ml9A 302 1.61e-35 b.85.7.1 79282 1n6aA 259 2.85e-35 b.76.2.1,b.85.7.1 80121,80122 1zkkA 167 4.91e-35 2qpwA 149 5.33e-34 1n3jA 119 5.89e-25 b.85.7.2 79963 2h21A 440 2.45e-17 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 3.15e-14 a.166.1.1,b.85.7.3 87654,87655 1l8fA 207 0.1817 b.52.1.1 84537 2eng 210 0.1872 2vphA 100 0.5110 2engA 210 0.6570 b.52.1.1 26895 2ag4A 164 1.170 b.95.1.1 126717 2p52A 196 1.247 2ag9A 164 1.284 2a1hA 365 2.590 e.17.1.1 125997 2pcxA 220 2.721 1ekfA 365 3.103 e.17.1.1 59445 1gky 187 3.310 2i6gA 199 4.551 c.66.1.44 137096 2yzuA 109 6.144 1xuuA 349 6.364 b.85.1.1,c.1.10.6 116067,116068 2cvkA 110 6.481 1gpr 162 6.689 2e0qA 104 6.793 1z8fA 228 6.878 1iyeA 309 7.576 e.17.1.1 83786 1be9A 119 8.178 b.36.1.1 24774 1v5lA 103 8.836 b.36.1.1 108378 2q3gA 89 11.89 2prvA 153 12.42 1thxA 115 12.55 c.47.1.1 32732 1wrvA 308 13.34 2ac0A 200 13.77 b.2.5.2 126539 2pktA 91 13.85 1nziA 159 13.99 b.23.1.1,g.3.11.1 86449,86450 2gh1A 301 14.95 c.66.1.49 135170 1gprA 162 15.01 b.84.3.1 28267 2e63A 170 15.51 1f3zA 161 15.51 b.84.3.1 28273 1wmzA 140 15.52 d.169.1.1 109422 1yk3A 210 15.73 d.108.1.1 123493 2ozfA 92 16.17 1g9oA 91 17.63 b.36.1.1 60400 1f7zA 233 18.29 b.47.1.2 59681 2eiyA 308 18.84 1tr7A 164 19.04 b.2.3.2 119328 1vfyA 73 19.28 g.50.1.1 45357 1znwA 207 19.57 c.37.1.1 125412 1uasA 362 20.15 b.71.1.1,c.1.8.1 88388,88389 1lm5A 214 20.87 d.211.2.1 74029 1sffA 426 20.99 c.67.1.4 105482 2ns9A 157 21.75 1wf7A 103 22.40 b.36.1.1 114577 2pbrA 195 22.80 2fsaA 174 24.66 1g13A 162 24.92 b.95.1.1 60194 2o1qA 145 25.16 3bpuA 88 25.99 2agcA 162 26.14 1zjkA 403 26.30 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 2pa1A 87 26.52 3daaA 277 26.80 e.17.1.1 43272 1hq8A 123 27.87 d.169.1.1 61127 1qavA 90 28.23 b.36.1.1 24777 1f7dA 136 28.64 b.85.4.1 28353 2coiA 386 29.32 1n7eA 97 29.93 b.36.1.1 91691 1uwfA 158 29.99 b.2.3.2 119758 1h9dA 134 31.06 b.2.5.6 60821 1mq7A 154 31.59 b.85.4.1 79404 1zhvA 134 31.80 d.58.18.8,d.58.18.8 125109,125110 1xffA 240 31.94 d.153.1.1 109580 2p9oA 169 33.15 1a0gA 282 33.37 e.17.1.1 43276 2biqA 219 33.66 1u5mA 73 33.66 g.27.1.2 113043 2gc1A 188 34.65 b.82.1.7 134928 1k2fA 190 34.67 b.8.1.2 68054 2oo4A 234 34.76 2v90A 96 35.41 1sixA 174 35.48 b.85.4.1 98892 1u5fA 148 36.11 b.55.1.1 119542 1v6fA 151 38.24 d.109.1.2 108395 1zpsA 138 38.74 b.168.1.1 125473 2j3hA 345 38.88 2de6D 115 39.43 1onqA 283 40.64 b.1.1.2,d.19.1.1 93365,93366 2oe3A 114 40.93 2ocsA 88 42.43 2bwjA 199 43.22 2a25A 193 44.97 1who 96 44.98 1wl7A 312 47.20 b.67.2.1 120996 1uypA 432 47.59 b.29.1.19,b.67.2.3 100176,100177 2b79A 144 49.61 1nt2A 210 50.32 c.66.1.3 86149 2ovxA 159 50.83 d.92.1.11 139388 2fwvA 226 51.32 1mpuA 138 52.38 d.169.1.1 85040 2zdrA 349 52.51 2qkdA 404 52.75 2q3wA 111 53.74 b.33.1.1 139813 1s31A 273 53.84 1qf9A 194 53.86 c.37.1.1 31848 1rutX 188 54.25 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2eu8A 216 54.44 2egoA 96 55.80 1vm9A 111 55.85 b.33.1.1 108886 2iwoA 120 56.67 1xkuA 330 57.82 c.10.2.7 115425 2ch4W 151 58.22 b.40.7.1 130451 2fmlA 273 58.25 a.4.5.68,d.113.1.6 133778,133779 1vk3A 615 59.06 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1qauA 112 59.18 b.36.1.1 24779 1tp5A 119 61.55 b.36.1.1 119305 2z62A 276 63.86 2gkpA 167 65.52 1a2vA 655 65.66 b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 1kqfA 1015 66.47 b.52.2.2,c.81.1.1 72871,72872 1gtvA 214 67.33 c.37.1.1 70537 3cngA 189 70.89 2bmwA 304 72.58 b.43.4.2,c.25.1.1 128815,128816 1kg0C 136 72.62 d.169.1.1 72445 2ho9A 167 74.39 2i4aA 107 74.68 1y7mA 164 75.26 b.160.1.1,d.7.1.1 122696,122697 2plrA 213 76.08 2cqsA 842 77.08 2vm1A 118 77.20 1dvpA 220 77.71 a.118.9.2,g.50.1.1 19216,45358 1sjgA 112 77.81 b.33.1.1 105647 2iiaA 131 77.85 1e58A 249 78.02 c.60.1.1 59262 2gy5A 423 78.34 1whoA 96 79.96 b.7.3.1 23215 2i1uA 121 80.53 1wcdJ 441 80.64 b.121.4.9 120887 2he2A 102 80.76 2vp4A 230 81.24 2bdtA 189 83.07 c.37.1.25 128344 1q5hA 147 84.51 b.85.4.1 95893 2c95A 196 85.15 2e26A 725 85.70 1bia 321 86.15 1nf3C 128 87.00 b.36.1.1 85596 2he4A 90 87.17 1iooA 196 87.82 d.124.1.1 71250 1ca1A 370 88.32 a.124.1.1,b.12.1.3 19340,23648 3b3fA 341 88.34 1wwlA 312 88.75 1igrA 478 89.89 c.10.2.5,c.10.2.5,g.3.9.1 30877,30878,44188