# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 8.98e-37 2o8jA 281 4.62e-36 2igqA 285 2.52e-35 3bo5A 290 4.19e-34 2r3aA 300 1.04e-33 1ml9A 302 1.30e-32 b.85.7.1 79282 2f69A 261 2.03e-32 b.76.2.1,b.85.7.1 133035,133036 1n6aA 259 2.26e-32 b.76.2.1,b.85.7.1 80121,80122 1zkkA 167 5.17e-32 2qpwA 149 5.38e-31 1n3jA 119 4.34e-23 b.85.7.2 79963 2h21A 440 6.69e-16 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 2.47e-13 a.166.1.1,b.85.7.3 87654,87655 2eng 210 0.3124 1l8fA 207 0.3584 b.52.1.1 84537 2vphA 100 0.3893 2engA 210 1.291 b.52.1.1 26895 2ag4A 164 1.815 b.95.1.1 126717 2p52A 196 1.994 2ag9A 164 2.498 1be9A 119 3.053 b.36.1.1 24774 2a1hA 365 3.618 e.17.1.1 125997 1ekfA 365 5.430 e.17.1.1 59445 1v5lA 103 5.765 b.36.1.1 108378 1gky 187 6.170 1rutX 188 6.484 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1iyeA 309 7.732 e.17.1.1 83786 2q3gA 89 8.689 1gpr 162 9.627 1wrvA 308 10.16 1uwfA 158 10.56 b.2.3.2 119758 1tr7A 164 10.84 b.2.3.2 119328 1nziA 159 10.97 b.23.1.1,g.3.11.1 86449,86450 2yzuA 109 11.41 2cvkA 110 11.46 2p9oA 169 11.99 2pcxA 220 12.02 1thxA 115 12.25 c.47.1.1 32732 1zjkA 403 12.58 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 2ozfA 92 12.88 1xuuA 349 13.21 b.85.1.1,c.1.10.6 116067,116068 1z8fA 228 13.39 2pktA 91 13.72 1g9oA 91 13.75 b.36.1.1 60400 1wmzA 140 14.09 d.169.1.1 109422 2eiyA 308 14.27 1n7eA 97 14.76 b.36.1.1 91691 2prvA 153 16.06 2e0qA 104 16.92 3daaA 277 17.66 e.17.1.1 43272 1qavA 90 17.77 b.36.1.1 24777 1gprA 162 18.60 b.84.3.1 28267 1vfyA 73 20.32 g.50.1.1 45357 1a0gA 282 20.87 e.17.1.1 43276 1f3zA 161 22.00 b.84.3.1 28273 1qauA 112 22.30 b.36.1.1 24779 2o1qA 145 22.63 2egoA 96 23.61 1mq7A 154 24.11 b.85.4.1 79404 2j3hA 345 25.08 2ns9A 157 25.82 1xffA 240 25.87 d.153.1.1 109580 1zhvA 134 25.88 d.58.18.8,d.58.18.8 125109,125110 2de6D 115 26.54 3bpuA 88 26.80 2i6gA 199 26.84 c.66.1.44 137096 1sixA 174 27.23 b.85.4.1 98892 1u5mA 73 27.36 g.27.1.2 113043 2pa1A 87 27.91 2v90A 96 29.32 1sffA 426 30.00 c.67.1.4 105482 2e63A 170 30.01 1nt2A 210 30.51 c.66.1.3 86149 1f7dA 136 30.68 b.85.4.1 28353 1f7zA 233 30.84 b.47.1.2 59681 1g13A 162 31.18 b.95.1.1 60194 1znwA 207 31.45 c.37.1.1 125412 2ocsA 88 31.52 2fsaA 174 31.53 1h9dA 134 31.97 b.2.5.6 60821 1yk3A 210 32.59 d.108.1.1 123493 2gh1A 301 33.55 c.66.1.49 135170 1v61A 132 36.15 b.55.1.1 108389 2gc1A 188 37.37 b.82.1.7 134928 2ch4W 151 38.15 b.40.7.1 130451 2qdlA 165 38.51 1wf7A 103 38.84 b.36.1.1 114577 2de6A 392 39.33 b.33.1.2,d.129.3.3 131415,131416 1tp5A 119 39.93 b.36.1.1 119305 2bwjA 199 41.70 2ho9A 167 43.11 2oo4A 234 43.47 3cngA 189 43.60 1zpsA 138 44.04 b.168.1.1 125473 1hq8A 123 45.65 d.169.1.1 61127 2pbrA 195 46.23 1u5fA 148 46.87 b.55.1.1 119542 1lm5A 214 46.92 d.211.2.1 74029 1gy7A 125 47.74 d.17.4.2 70738 1uasA 362 48.51 b.71.1.1,c.1.8.1 88388,88389 1gl4A 285 49.47 d.22.1.2,g.3.11.5 65286,65287 1qf9A 194 50.91 c.37.1.1 31848 2he4A 90 51.91 2coiA 386 52.69 1v6fA 151 52.78 d.109.1.2 108395 1nw2A 105 53.90 c.47.1.1 92215 2z62A 276 53.99 1wl7A 312 54.02 b.67.2.1 120996 1q5hA 147 55.44 b.85.4.1 95893 1kqfA 1015 56.21 b.52.2.2,c.81.1.1 72871,72872 1wcdJ 441 56.72 b.121.4.9 120887 2vp4A 230 59.71 2he2A 102 60.08 1m40A 263 61.49 e.3.1.1 74437 1sjgA 112 61.57 b.33.1.1 105647 1nf3C 128 62.37 b.36.1.1 85596 2e4qA 109 64.27 2pifA 276 64.45 1wwlA 312 65.63 2oe3A 114 65.74 2b79A 144 66.14 2q9vA 90 66.60 1q3oA 109 66.61 b.36.1.1 95700 1dunA 134 67.21 b.85.4.1 28371 2plrA 213 67.27 2iwoA 120 68.11 1xkuA 330 68.75 c.10.2.7 115425 2a25A 193 68.95 2ovxA 159 69.14 d.92.1.11 139388 1f9mA 112 70.80 c.47.1.1 32736 1s31A 273 73.29 2ol1A 147 73.65 1dvpA 220 73.78 a.118.9.2,g.50.1.1 19216,45358 2p5xA 230 76.01 2i1uA 121 76.06 2agcA 162 76.21 2q3wA 111 76.45 b.33.1.1 139813 2bkrA 212 77.20 d.3.1.7 128710 1uypA 432 77.26 b.29.1.19,b.67.2.3 100176,100177 2i04A 85 77.58 2huhA 147 78.34 3ullA 132 78.71 b.40.4.3 25282 2gumA 628 79.02 1tz9A 367 79.49 c.1.15.6 107466 1mmqA 170 79.58 d.92.1.11 40396 2ea7A 434 80.19 2bazA 142 81.45 1knmA 130 82.14 b.42.2.1 72781 1onqA 283 82.92 b.1.1.2,d.19.1.1 93365,93366 1vid 221 83.25 2vluA 122 84.02 2zdrA 349 84.28 1kwaA 88 84.29 b.36.1.1 24772 1eo9A 209 85.88 b.3.6.1 22731 2i7fA 108 85.94 4ubpB 126 86.51 b.85.3.1 28345 2fr2A 172 86.74 b.60.1.8 133963 1s68A 249 88.48 d.142.2.4 98591 1k2fA 190 88.80 b.8.1.2 68054 2z0bA 131 88.81 2aujD 309 88.83 1bkb 136 88.98 2ohcA 289 89.33