# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 9.46e-43 2o8jA 281 8.88e-41 2igqA 285 1.01e-40 3bo5A 290 1.90e-38 2r3aA 300 4.54e-38 2f69A 261 2.95e-36 b.76.2.1,b.85.7.1 133035,133036 1zkkA 167 4.93e-36 1ml9A 302 7.72e-36 b.85.7.1 79282 1n6aA 259 1.59e-35 b.76.2.1,b.85.7.1 80121,80122 2qpwA 149 1.06e-34 1n3jA 119 1.34e-24 b.85.7.2 79963 2h21A 440 2.49e-15 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 3.89e-14 a.166.1.1,b.85.7.3 87654,87655 2p52A 196 0.9451 2i5nH 258 1.637 b.41.1.1,f.23.10.1 137064,137065 2bolA 314 1.821 2vphA 100 2.498 2uvpA 186 3.063 1sffA 426 3.824 c.67.1.4 105482 1yo8A 634 4.846 1f7zA 233 5.398 b.47.1.2 59681 2gh1A 301 6.073 c.66.1.49 135170 2p9oA 169 6.417 1u5fA 148 7.776 b.55.1.1 119542 1ia9A 280 8.770 d.144.1.5 62113 2pcxA 220 8.861 1k2fA 190 9.385 b.8.1.2 68054 1q6hA 224 9.877 d.26.1.1 95975 1sr2A 116 11.65 a.24.10.4 112109 1wrvA 308 14.85 1v5lA 103 15.14 b.36.1.1 108378 2eiyA 308 15.33 1iyeA 309 15.62 e.17.1.1 83786 2biqA 219 16.06 1yk3A 210 16.39 d.108.1.1 123493 1qexA 288 16.94 b.32.1.1 24425 2fsaA 174 17.78 1uwfA 158 19.09 b.2.3.2 119758 1wu2A 396 19.56 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 1nmoA 247 20.22 c.135.1.1 91980 1d8hA 311 21.13 d.63.1.1 39544 2qzvA 873 25.18 2a1hA 365 25.99 e.17.1.1 125997 2gjcA 326 26.02 c.3.1.6 135280 1a0gA 282 26.55 e.17.1.1 43276 1ekfA 365 27.26 e.17.1.1 59445 2b79A 144 27.55 1v6fA 151 28.70 d.109.1.2 108395 1nf3C 128 29.82 b.36.1.1 85596 2ozfA 92 30.04 2i6gA 199 30.28 c.66.1.44 137096 2j21A 219 30.31 2ho9A 167 31.01 1tr7A 164 31.03 b.2.3.2 119328 2prvA 153 31.22 1vfyA 73 32.50 g.50.1.1 45357 2qkdA 404 32.55 2q3gA 89 32.98 1be9A 119 33.19 b.36.1.1 24774 2ac0A 200 33.49 b.2.5.2 126539 1mmqA 170 34.16 d.92.1.11 40396 1q6uA 245 35.71 d.26.1.1 95998 1thxA 115 36.09 c.47.1.1 32732 1g9oA 91 36.27 b.36.1.1 60400 2yzuA 109 36.90 2cvkA 110 37.24 2pktA 91 38.16 1dunA 134 38.32 b.85.4.1 28371 1dyoA 160 38.45 b.18.1.7 23771 1pbjA 125 38.56 d.37.1.1,d.37.1.1 94414,94415 1gky 187 38.59 1zjkA 403 38.96 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 1za0A 275 39.64 a.25.1.2 124774 3daaA 277 40.19 e.17.1.1 43272 1q3oA 109 42.91 b.36.1.1 95700 1ppjE 196 46.81 b.33.1.1,f.23.12.1 104260,104261 2ag4A 164 47.17 b.95.1.1 126717 1qavA 90 49.77 b.36.1.1 24777 2oo4A 234 50.22 1js3A 486 52.86 c.67.1.6 67215 2ckzA 161 54.90 2ok8A 316 54.97 2py6A 409 55.16 2ct9A 208 55.84 3bfqG 132 56.58 2e63A 170 58.93 2bw3A 534 60.49 a.270.1.1,c.55.3.12 129317,129318 1wyuA 438 60.74 c.67.1.7 121452 2alaA 391 62.36 b.1.18.4,f.10.1.1 126973,126974 2i1yA 301 62.41 1hzpA 335 62.59 c.95.1.2,c.95.1.2 61455,61456 2b20A 403 62.76 b.1.18.20,c.69.1.2 127685,127686 2bmwA 304 63.20 b.43.4.2,c.25.1.1 128815,128816 2cg4A 152 65.18 a.4.5.32,d.58.4.2 130417,130418 2bkrA 212 65.23 d.3.1.7 128710 3c5oA 157 65.29 2ioiA 201 67.26 2yv5A 302 68.15 1n7eA 97 68.90 b.36.1.1 91691 1cqqA 180 69.71 b.47.1.4 26422 3bpuA 88 70.01 1ycdA 243 70.19 1fezA 256 70.68 c.108.1.3 43343 2yreA 100 70.79 2ch4W 151 71.09 b.40.7.1 130451 1nziA 159 71.64 b.23.1.1,g.3.11.1 86449,86450 3cngA 189 72.68 2f1wA 158 72.90 2j58A 359 73.73 2uzcA 88 75.24 2rieA 160 75.73 3bg1B 442 76.43 2a74B 188 76.49 2e9xC 219 76.56 2ffuA 501 76.74 2q4hA 351 77.41 d.13.1.2,d.13.1.2 139853,139854 1z8fA 228 77.62 2ovxA 159 77.69 d.92.1.11 139388 2ebdA 309 78.13 1eysH 259 78.20 b.41.1.1,f.23.10.1 25484,43517 2pibA 216 78.28 2ol1A 147 83.61 2e0qA 104 83.88 1vdwA 254 84.13 e.7.1.1 100569 1wf7A 103 84.75 b.36.1.1 114577 2bhuA 602 86.28 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 1ikoP 178 86.58 b.6.1.5 71243 1sixA 174 86.63 b.85.4.1 98892 2qdlA 165 86.70 2qggA 182 86.72 2egoA 96 87.19 2iwnA 97 87.80 3bojA 213 88.42 2i1uA 121 89.00 1tz9A 367 89.53 c.1.15.6 107466 1inlA 296 89.55 c.66.1.17 66220 1pmiA 440 89.86 b.82.1.3 28114