# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rfiA 285 2.08e-37 2o8jA 281 2.91e-36 2igqA 285 6.71e-36 3bo5A 290 1.90e-34 2r3aA 300 2.20e-34 1ml9A 302 2.30e-32 b.85.7.1 79282 2f69A 261 3.07e-32 b.76.2.1,b.85.7.1 133035,133036 1zkkA 167 1.07e-31 2qpwA 149 1.51e-31 1n6aA 259 2.01e-31 b.76.2.1,b.85.7.1 80121,80122 1n3jA 119 4.21e-22 b.85.7.2 79963 2h21A 440 2.97e-15 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 1.87e-13 a.166.1.1,b.85.7.3 87654,87655 2p52A 196 0.06660 2pcxA 220 0.6059 2gh1A 301 1.332 c.66.1.49 135170 2i6gA 199 2.108 c.66.1.44 137096 1z8fA 228 3.162 2ac0A 200 3.569 b.2.5.2 126539 2apr 325 3.817 1f7zA 233 5.852 b.47.1.2 59681 2p9oA 169 6.872 2prvA 153 7.067 2ioiA 201 7.076 2biqA 219 7.750 1gpr 162 7.929 1uasA 362 8.647 b.71.1.1,c.1.8.1 88388,88389 1vid 221 8.925 1nziA 159 9.426 b.23.1.1,g.3.11.1 86449,86450 1a2vA 655 9.677 b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 1tr7A 164 10.00 b.2.3.2 119328 2j21A 219 11.69 1d8hA 311 11.72 d.63.1.1 39544 2bmwA 304 11.84 b.43.4.2,c.25.1.1 128815,128816 1nt2A 210 12.49 c.66.1.3 86149 1uwfA 158 13.12 b.2.3.2 119758 1gky 187 13.60 2vphA 100 13.79 1gprA 162 15.03 b.84.3.1 28267 1vfyA 73 15.37 g.50.1.1 45357 1h1dA 221 15.70 c.66.1.1 83452 2p7iA 250 16.72 2ok8A 316 17.87 1zkdA 387 17.94 c.66.1.52 125184 1f3zA 161 19.60 b.84.3.1 28273 2qdlA 165 20.33 2ag9A 164 20.49 1q5hA 147 20.58 b.85.4.1 95893 1znwA 207 20.93 c.37.1.1 125412 1on3A 523 21.00 c.14.1.4,c.14.1.4 87107,87108 2e63A 170 21.04 1d2mA 665 21.59 c.37.1.19,c.37.1.19 32417,32418 1jznA 135 21.60 d.169.1.1 84262 2ag4A 164 21.98 b.95.1.1 126717 5ptp 223 23.03 1f7dA 136 23.29 b.85.4.1 28353 2q3gA 89 25.66 1hj9A 226 26.07 b.47.1.2 65845 1u5fA 148 26.27 b.55.1.1 119542 3tglA 269 26.96 c.69.1.17 34733 1try 224 27.35 1iyeA 309 27.85 e.17.1.1 83786 1u5mA 73 28.15 g.27.1.2 113043 1ne7A 289 28.53 c.124.1.1 91833 2aotA 292 29.58 c.66.1.19 127098 1gy7A 125 29.97 d.17.4.2 70738 1xdzA 240 30.85 c.66.1.20 115196 2cvkA 110 31.18 1sffA 426 31.35 c.67.1.4 105482 2zdrA 349 31.47 1be9A 119 31.60 b.36.1.1 24774 1wu2A 396 31.86 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 1y97A 238 32.15 c.55.3.5 122773 1v5lA 103 33.74 b.36.1.1 108378 1dunA 134 33.75 b.85.4.1 28371 1thxA 115 34.17 c.47.1.1 32732 1jsxA 207 35.12 c.66.1.20 71846 2ho9A 167 35.61 1g9oA 91 36.10 b.36.1.1 60400 1q3oA 109 36.73 b.36.1.1 95700 1qexA 288 36.90 b.32.1.1 24425 2e26A 725 37.47 1h9dA 134 37.48 b.2.5.6 60821 1v61A 132 38.93 b.55.1.1 108389 1sixA 174 39.11 b.85.4.1 98892 2ol1A 147 40.87 2de6A 392 41.05 b.33.1.2,d.129.3.3 131415,131416 1tz9A 367 42.40 c.1.15.6 107466 1mctA 223 42.71 b.47.1.2 25961 1tibA 269 42.84 c.69.1.17 34738 1xuuA 349 43.34 b.85.1.1,c.1.10.6 116067,116068 2yzuA 109 45.60 1mq7A 154 45.70 b.85.4.1 79404 1v6fA 151 46.16 d.109.1.2 108395 1pq7A 224 46.70 b.47.1.2 95002 1bqyA 234 46.77 b.47.1.2 26332 1dvpA 220 46.95 a.118.9.2,g.50.1.1 19216,45358 2v90A 96 47.45 2iwoA 120 47.70 2rieA 160 47.74 1a0gA 282 48.09 e.17.1.1 43276 1f7sA 139 48.86 d.109.1.2 40857 3c0wA 235 49.18 2ea7A 434 49.67 2f1wA 158 50.28 2eiyA 308 50.68 2avdA 219 50.80 c.66.1.1 127377 2bkxA 242 50.82 1s95A 333 50.82 d.159.1.3 105375 2dchX 216 51.98 1kqfA 1015 52.11 b.52.2.2,c.81.1.1 72871,72872 1wdvA 152 52.49 d.116.1.1 114539 1wrvA 308 53.83 2viuA 328 53.83 b.19.1.2 23797 2p8jA 209 55.15 1k2fA 190 55.35 b.8.1.2 68054 2ozfA 92 55.81 1rylA 167 56.18 d.276.1.1 105124 1ybiA 288 59.06 2vngA 180 59.18 3daaA 277 59.73 e.17.1.1 43272 2ch4W 151 61.97 b.40.7.1 130451 1wl7A 312 62.27 b.67.2.1 120996 1euaA 213 62.95 c.1.10.1 29155 2yreA 100 64.01 1ytaA 180 64.12 c.55.3.5 124002 1fn8A 224 65.27 b.47.1.2 26012 1inlA 296 66.03 c.66.1.17 66220 2z10A 194 67.36 1tupA 219 67.86 b.2.5.2 22434 1ow1A 195 67.93 b.131.1.3 93625 2bolA 314 68.21 2bazA 142 68.50 1vyqA 173 69.60 b.85.4.1 120548 2i79A 172 70.66 1jztA 246 71.21 c.104.1.1 63319 2i1nA 102 72.55 1qavA 90 73.58 b.36.1.1 24777 2hft 218 73.89 3cngA 189 74.96 1wehA 171 75.65 c.129.1.1 114551 3coxA 507 75.79 c.3.1.2,d.16.1.1 30332,37863 2a25A 193 76.11 1dbxA 158 77.95 d.116.1.1 40928 2ffuA 501 78.19 1jk7A 323 78.79 d.159.1.3 63144 1wmzA 140 80.75 d.169.1.1 109422 1vlyA 338 81.07 b.44.2.1,d.250.1.1 108871,108872 1j58A 385 81.45 b.82.1.2 71531 2basA 431 81.75 c.1.33.1,d.110.6.2 128244,128245 1xffA 240 82.21 d.153.1.1 109580 1stfI 98 82.32 d.17.1.2 38006 2ns9A 157 83.89 2b79A 144 83.90 1y7mA 164 85.86 b.160.1.1,d.7.1.1 122696,122697 3ullA 132 85.98 b.40.4.3 25282 2fsaA 174 86.31 2qmjA 870 86.86 1vkcA 158 89.42 d.108.1.1 113663