# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o8jA 281 2.84e-20 2rfiA 285 3.36e-20 2igqA 285 6.82e-20 3bo5A 290 7.59e-19 2r3aA 300 1.14e-18 2qpwA 149 3.23e-17 1ml9A 302 4.40e-17 b.85.7.1 79282 1zkkA 167 1.02e-14 2f69A 261 1.54e-14 b.76.2.1,b.85.7.1 133035,133036 1n6aA 259 1.46e-13 b.76.2.1,b.85.7.1 80121,80122 1n3jA 119 2.01e-07 b.85.7.2 79963 2h21A 440 2.36e-05 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 3.11e-05 a.166.1.1,b.85.7.3 87654,87655 1erjA 393 1.657 b.69.4.1 27660 1euwA 152 11.49 b.85.4.1 28349 2df7A 458 11.68 b.121.4.9 131449 2fcfA 103 12.53 b.36.1.1 133267 2z8rA 591 13.27 2ag4A 164 13.31 b.95.1.1 126717 1t6eX 381 13.62 b.50.1.2 106564 1abrB 267 13.72 b.42.2.1,b.42.2.1 25563,25564 2pbiB 354 14.50 1u7eB 154 14.60 1htrB 329 14.78 1rqpA 299 15.20 b.141.1.1,c.132.1.1 97754,97755 1wu2A 396 15.25 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 1mpuA 138 15.35 d.169.1.1 85040 2qkvA 96 15.87 1fuxA 166 16.61 b.17.1.2 60034 2ag9A 164 16.67 1hh2P 344 18.61 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1gotB 340 18.64 b.69.4.1 27648 2egjA 128 18.72 2f0aA 98 19.47 b.36.1.1 132661 1k2fA 190 21.01 b.8.1.2 68054 1dbhA 354 21.40 a.87.1.1,b.55.1.1 18514,26967 1a34A 159 23.05 b.121.7.1 23286 1a0rB 340 23.82 b.69.4.1 27658 1vpsA 289 24.56 b.121.6.1 23336 2gv8A 447 24.68 c.3.1.5,c.3.1.5 135759,135760 2f9hA 129 24.93 b.161.1.1 133162 2i1nA 102 25.49 1g8lA 411 26.28 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2o1qA 145 27.62 1r94A 118 27.67 b.124.1.1 97251 2pktA 91 28.18 2gzvA 114 28.36 1vj1A 363 28.50 b.35.1.2,c.2.1.1 100794,100795 2vphA 100 28.75 1k0rA 366 28.86 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 1zc0A 309 29.77 1lf2A 331 29.93 b.50.1.2 77914 2uzcA 88 31.01 2q3gA 89 32.47 2h2bA 107 32.97 1q5hA 147 33.35 b.85.4.1 95893 1r5mA 425 34.96 2fsrA 195 35.39 d.108.1.1 134036 2p9oA 169 35.43 2ho9A 167 36.01 1x6mA 196 36.86 b.88.1.4 114920 1m15A 357 36.93 a.83.1.1,d.128.1.2 78368,78369 1o4tA 133 37.31 b.82.1.9 86622 2opgA 98 37.87 1q3oA 109 38.15 b.36.1.1 95700 2fneA 117 38.41 b.36.1.1 133813 2bcjB 340 39.33 b.69.4.1 128289 1bxoA 323 39.38 b.50.1.2 26805 2reyA 100 39.58 1hq8A 123 39.89 d.169.1.1 61127 1ihjA 98 41.21 b.36.1.1 62382 1nb8A 353 41.77 d.3.1.9 80385 1mmlA 265 42.12 e.8.1.2 43015 2fwvA 226 43.27 2v74B 346 45.01 1f7dA 136 45.47 b.85.4.1 28353 2pcxA 220 45.63 2apr 325 45.70 2ol1A 147 46.30 1tp5A 119 47.00 b.36.1.1 119305 1s5uA 138 47.82 d.38.1.1 98573 2ocsA 88 48.56 1u1zA 168 48.79 d.38.1.6 107602 2iwoA 120 48.94 2hx5A 152 49.24 d.38.1.1 136837 1f60A 458 49.53 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2he4A 90 50.60 1s4iA 175 51.15 1xe1A 116 51.59 b.43.3.1 109571 2p52A 196 54.53 1te5A 257 54.74 d.153.1.1 106795 1mkaA 171 55.22 d.38.1.2 38543 1mml 265 55.44 1rthA 560 55.81 c.55.3.1,e.8.1.2 33576,43028 1qavA 90 56.10 b.36.1.1 24777 1t4wA 196 56.95 b.2.5.2 106427 2h3lA 103 57.79 b.36.1.1 136046 1be9A 119 58.79 b.36.1.1 24774 1f86A 115 59.46 b.3.4.1 59689 1kwaA 88 59.74 b.36.1.1 24772 1ybyA 215 60.40 2pa1A 87 60.58 1vyqA 173 60.60 b.85.4.1 120548 2bmwA 304 61.00 b.43.4.2,c.25.1.1 128815,128816 1x82A 190 61.80 b.82.1.7 114955 1w0pA 781 63.65 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2frnA 278 64.29 c.66.1.47 133993 1bdoA 80 64.62 b.84.1.1 28214 1yk3A 210 64.84 d.108.1.1 123493 2o5uA 148 65.76 2rczA 81 65.79 2gf6A 135 66.25 d.38.1.1 135077 1at3A 247 66.51 b.57.1.1 27021 2oafA 151 66.62 1vqwA 457 66.79 c.3.1.5,c.3.1.5 114028,114029 1rcqA 357 67.23 b.49.2.2,c.1.6.1 104882,104883 2gnqA 336 68.77 2egoA 96 69.76 1crzA 403 69.85 b.68.4.1,c.51.2.1 27629,33211 2cyeA 133 70.22 d.38.1.1 131021 1aijH 260 70.77 b.41.1.1,f.23.10.1 25466,43463 2p3wA 112 72.53 2v90A 96 72.72 1nykA 165 73.80 b.33.1.1 86408 2q1zB 195 73.95 2he2A 102 75.53 1pfzA 380 75.67 b.50.1.2 26881 1mv3A 213 75.69 b.34.2.1 91468 1yo8A 634 75.73 1wosA 364 75.83 b.44.2.1,d.250.1.1 109468,109469 1fjjA 159 76.63 b.17.1.2 59852 2zd1A 557 77.90 2bazA 142 79.08 1xtmA 175 79.35 2p17A 277 79.45 1g9oA 91 81.14 b.36.1.1 60400 1ftpA 133 82.26 b.60.1.2 27199 3b3fA 341 82.51 1ppjE 196 82.70 b.33.1.1,f.23.12.1 104260,104261 2fbyA 205 83.23 1o7zA 77 83.40 d.9.1.1 86660 2jilA 97 83.78 2v72A 143 83.92 1txvB 440 84.09 b.1.15.1,c.62.1.1,g.16.2.1 112784,112785,112786 2ffuA 501 84.35 3cmsA 323 84.53 b.50.1.2 26865 2c78A 405 87.23 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 2ozfA 92 87.74 1wcdJ 441 87.96 b.121.4.9 120887 1wf7A 103 88.66 b.36.1.1 114577