# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yrvA	117	2.757		
1edgA	380	4.635	c.1.8.3	28807
2hqxA	246	7.343	b.34.9.1	136675
1mi8A	158	7.460	b.86.1.2	91279
2b0vA	153	8.949	d.113.1.1	127650
1w5rA	278	9.837	d.3.1.5	120643
1mhnA	59	10.07	b.34.9.1	84964
2qqrA	118	10.92		
1i8dA	213	11.41	b.43.4.3,b.43.4.3	61953,61954
1z9nA	177	16.61		
1avqA	228	18.37	c.52.1.13	33326
2pz0A	252	18.41		
1kzlA	208	18.67	b.43.4.3,b.43.4.3	77635,77636
2jepA	395	19.28		
2bkdN	134	22.37		
1jj2B	337	22.97	b.43.3.2	63086
1qtnB	95	24.20		
1gwmA	153	25.52	b.18.1.19	83348
1vhmA	195	25.98	d.110.2.1	100691
2yvpA	182	26.87		
1sc3B	88	26.92		
1gvhA	396	30.94	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1vp2A	208	32.36	c.51.4.1	113933
2dkoB	103	32.65		
1vqoB	338	33.91	b.43.3.2	120363
1lla	628	33.94		
1em2A	229	34.89	d.129.3.2	41321
2hftA	218	35.25	b.1.2.1,b.1.2.1	21951,21952
1qwdA	177	36.78	b.60.1.1	96471
1nmeB	92	37.06		
1c1dA	355	38.23	c.2.1.7,c.58.1.1	30270,33918
2gfaA	119	39.92	b.34.9.1,b.34.9.1	135089,135090
2r6hA	290	40.50		
1oycA	400	41.08	c.1.4.1	28603
1vecA	206	41.08	c.37.1.19	100575
2ouiA	360	44.23		
1wgsA	133	45.17	b.34.13.3	114622
1ryaA	160	46.68	d.113.1.5	105122
1ok0A	74	48.17	b.5.1.1	93191
1hoe	74	48.64		
1t3lA	337	51.11	b.34.2.1,c.37.1.1	106358,106359
2dyqA	144	52.41		
1d2oA	187	57.68	b.3.5.1,b.3.5.1	22625,22626
1arsA	396	57.99	c.67.1.1	34287
1xf1A	926	63.05		
1am2A	199	64.64	b.86.1.2	28381
2fjrA	189	64.72		
2f5kA	102	65.63	b.34.13.3	132995
1gwyA	175	65.90	b.97.1.1	83356
1iazA	179	67.00	b.97.1.1	62131
2aqpA	164	67.80		
2av9A	147	70.16	d.38.1.1	127365
1wznA	252	70.70	c.66.1.43	121525
1zjrA	211	72.53		
2j01E	206	72.87		
2jixB	225	75.52		
1wleA	501	76.42		
1a8pA	258	81.74	b.43.4.2,c.25.1.1	25654,31544
3bkpA	232	84.03		
1nnvA	110	84.50	d.17.7.1	92012
2qdxA	257	84.67		
1rlw	126	85.13		
1wfyA	104	86.81	d.15.1.5	114597
2dtrA	226	89.07	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1zxfA	155	89.74	d.129.3.5	125771