# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.4232 b.34.9.1 84964 1g5vA 88 1.079 b.34.9.1 60292 1lcyA 325 2.415 b.36.1.4,b.47.1.1 73834,73835 2rh7A 239 2.860 2fhdA 153 3.047 1vqoA 240 3.767 b.34.5.3,b.40.4.5 120361,120362 2j5aA 110 4.499 1dq3A 454 5.777 b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1jdpA 441 6.028 c.93.1.1 62906 2psoA 237 6.322 2gw4B 162 6.342 2hc8A 113 8.347 1l1jA 239 8.495 b.47.1.1 84516 1y8tA 324 10.07 b.36.1.4,b.47.1.1 122763,122764 2p0pA 126 10.51 1vqoK 132 10.52 b.39.1.1 120372 2av9A 147 11.54 d.38.1.1 127365 1cr5A 189 12.71 b.52.2.3,d.31.1.1 26931,38465 1zc1A 208 13.95 1j0hA 588 14.75 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1danT 80 14.95 b.1.2.1 21953 1jj2A 239 15.27 b.34.5.3,b.40.4.5 63084,63085 1q3lA 69 15.87 b.34.13.2 111652 2in0A 139 17.09 2eqkA 85 17.74 1b9cA 236 18.28 d.22.1.1 38358 7taa 478 18.34 1fnoA 417 18.47 d.58.19.1,c.56.5.4 70145,75841 1louA 101 19.09 d.58.14.1 39323 1ris 101 19.25 1wi5A 119 19.39 b.40.4.5 114661 1r61A 207 19.54 c.8.8.1 97138 1x24A 180 19.54 2qqrA 118 19.89 2p3yA 491 20.10 1b8oA 284 20.52 c.56.2.1 33762 1g8kA 825 20.76 b.52.2.2,c.81.1.1 26920,35328 2evrA 246 21.08 b.34.11.3,d.3.1.16 132440,132441 1dz1A 70 22.20 b.34.13.2 37473 1at0 145 24.49 1kypA 237 25.11 d.22.1.1 73280 1agjA 242 25.36 b.47.1.1 25827 1wgsA 133 25.65 b.34.13.3 114622 1oxdA 227 25.73 d.22.1.1 93687 1fdrA 248 25.93 b.43.4.2,c.25.1.1 25653,31543 1h30A 422 26.50 b.29.1.4,b.29.1.4 76604,76605 1n7oA 721 27.66 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2ee1A 64 28.06 1ypfA 336 28.09 3c2qA 345 28.23 2r55A 231 28.28 1h6rA 236 29.11 d.22.1.1 65683 1p0yA 444 30.30 a.166.1.1,b.85.7.3 87654,87655 2hbwA 235 30.34 2pn0A 141 30.39 2gfaA 119 31.28 b.34.9.1,b.34.9.1 135089,135090 2hft 218 34.98 1lba 146 36.92 1ppjE 196 37.42 b.33.1.1,f.23.12.1 104260,104261 2f5kA 102 37.44 b.34.13.3 132995 1uisA 231 37.51 d.22.1.1 99431 2opkA 112 38.50 1at0A 145 38.83 b.86.1.1 28374 2b2yA 187 41.19 b.34.13.2,b.34.13.2 127754,127755 2h21A 440 41.93 a.166.1.1,b.85.7.3 135976,135977 1i8dA 213 42.15 b.43.4.3,b.43.4.3 61953,61954 1sotA 320 42.35 b.36.1.4,b.47.1.1 105852,105853 1h3gA 601 44.18 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 2bjrA 368 44.45 b.169.1.1,b.169.1.1 128628,128629 1te0A 318 44.62 b.36.1.4,b.47.1.1 112400,112401 1kbvA 327 45.86 b.6.1.3,b.6.1.3 68395,68396 1xcbA 211 46.70 a.4.5.38,c.2.1.12 109552,109553 2hufA 393 47.17 1xu1R 42 47.59 g.24.1.2 116036 1kk1A 410 47.65 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 2fmlA 273 48.58 a.4.5.68,d.113.1.6 133778,133779 1b9eB 30 49.82 g.1.1.1 43885 1rl2A 137 50.04 b.34.5.3,b.40.4.5 24610,25342 2a90A 240 51.07 1ep3B 262 51.17 b.43.4.2,c.25.1.3 25664,31554 1c30B 382 51.70 c.8.3.1,c.23.16.1 30736,31413 2qjlA 99 54.35 1pfbA 55 54.49 b.34.13.2 94655 2p0oA 372 56.28 2jw5A 106 57.99 1m5aB 30 59.12 g.1.1.1 74491 1dpjA 329 61.05 b.50.1.2 26828 2as9A 210 61.70 1smrA 335 62.12 b.50.1.2 26878 2yyoA 171 62.15 1ema 236 62.36 2egvA 229 62.43 3c5tA 122 63.31 2bkdN 134 64.36 1jhfA 202 65.12 a.4.5.2,b.87.1.1 63057,63058 1jnyA 435 65.18 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1s6yA 450 65.34 c.2.1.5,d.162.1.2 105314,105315 2vadA 223 66.75 1ybdA 239 67.20 c.73.1.3 122884 8abpA 306 68.90 c.93.1.1 35647 1ae9A 179 69.14 d.163.1.1 42153 1f1gA 154 70.70 b.1.8.1 76153 1he7A 126 71.10 b.1.1.4 60970 1rxyA 253 71.27 c.56.2.1 98065 1r7aA 504 72.15 b.71.1.1,c.1.8.1 97192,97193 1x1iA 752 72.36 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1g8jA 825 72.57 b.52.2.2,c.81.1.1 26924,35332 1mw7A 240 73.14 e.39.1.1 79557 1wpgA 994 74.11 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 1q1gA 276 74.15 c.56.2.1 95574 1zuxA 224 74.24 2eveA 157 75.74 b.122.1.8 132427 1nykA 165 76.04 b.33.1.1 86408 1bag 425 76.22 2i8tA 167 76.46 1jysA 242 76.52 c.56.2.1 77216 1gppA 237 76.57 b.86.1.2 76262 1d2oA 187 77.31 b.3.5.1,b.3.5.1 22625,22626 1hrnA 337 78.26 b.50.1.2 26869 1eo1A 124 78.65 c.55.5.1 33739 1pdqA 72 78.76 b.34.13.2 94590 1jxgA 100 79.14 b.6.1.1 67413 1z85A 234 79.74 1je0A 236 80.29 c.56.2.1 66581 1jdiA 231 81.60 c.74.1.1 66551 1widA 130 83.79 b.142.1.2 114667 2nwfA 141 84.12 1k0wA 231 85.12 c.74.1.1 77220 2hp4A 114 86.49 1msoB 30 86.78 g.1.1.1 85092 1vqoQ 96 86.92 b.34.5.1 120378 1n7zA 334 88.90 b.127.1.1 85380 1vhwA 253 89.51 c.56.2.1 100706 1sat 471 89.98