# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhnA	59	1.343	b.34.9.1	84964
1g5vA	88	2.907	b.34.9.1	60292
2rh7A	239	3.417		
2j5aA	110	5.996		
2fhdA	153	8.878		
1danT	80	13.74	b.1.2.1	21953
1ris	101	14.08		
2psoA	237	15.26		
2eryA	172	16.76	c.37.1.8	132306
1louA	101	16.89	d.58.14.1	39323
1vqoK	132	18.42	b.39.1.1	120372
1y8tA	324	18.44	b.36.1.4,b.47.1.1	122763,122764
1x24A	180	19.28		
1vqoA	240	19.32	b.34.5.3,b.40.4.5	120361,120362
2av9A	147	22.72	d.38.1.1	127365
2eqkA	85	27.66		
1zc1A	208	28.69		
1te0A	318	29.72	b.36.1.4,b.47.1.1	112400,112401
2pn0A	141	33.03		
1o6gA	710	33.81	b.69.7.1,c.69.1.4	81087,81088
1b9cA	236	34.36	d.22.1.1	38358
1ecxA	384	36.30	c.67.1.3	34431
1l1jA	239	36.47	b.47.1.1	84516
8abpA	306	37.72	c.93.1.1	35647
1dz1A	70	38.69	b.34.13.2	37473
1lba	146	39.25		
1jdpA	441	39.57	c.93.1.1	62906
1uisA	231	43.45	d.22.1.1	99431
1s6yA	450	43.46	c.2.1.5,d.162.1.2	105314,105315
1lcyA	325	44.01	b.36.1.4,b.47.1.1	73834,73835
2gw4B	162	44.23		
1h6rA	236	45.84	d.22.1.1	65683
1kk1A	410	46.43	b.43.3.1,b.44.1.1,c.37.1.8	72634,72635,72636
1vqoQ	96	48.62	b.34.5.1	120378
1oxdA	227	50.71	d.22.1.1	93687
1n7oA	721	52.23	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
1eg5A	384	52.57	c.67.1.3	34429
2r55A	231	58.71		
2in0A	139	59.31		
1wi5A	119	59.47	b.40.4.5	114661
1kypA	237	59.77	d.22.1.1	73280
1jj2A	239	61.24	b.34.5.3,b.40.4.5	63084,63085
2a25A	193	65.07		
1q3lA	69	67.90	b.34.13.2	111652
1sotA	320	68.03	b.36.1.4,b.47.1.1	105852,105853
2qqrA	118	71.68		
2hft	218	73.66		
2vadA	223	77.93		
2gfaA	119	79.52	b.34.9.1,b.34.9.1	135089,135090
1kbvA	327	80.00	b.6.1.3,b.6.1.3	68395,68396
1h30A	422	81.18	b.29.1.4,b.29.1.4	76604,76605
2p3yA	491	81.43		
1yreA	197	84.42	d.108.1.1	123919
2q83A	346	85.11		
2btlA	134	86.19	b.148.1.1	129154