# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhnA	59	2.066	b.34.9.1	84964
1g5vA	88	4.744	b.34.9.1	60292
2fhdA	153	7.285		
2rh7A	239	7.531		
2j5aA	110	9.680		
2av9A	147	13.81	d.38.1.1	127365
2eryA	172	17.68	c.37.1.8	132306
1ris	101	19.39		
1louA	101	21.04	d.58.14.1	39323
1vqoK	132	23.88	b.39.1.1	120372
2psoA	237	25.36		
1zc1A	208	25.84		
1danT	80	26.04	b.1.2.1	21953
1x24A	180	26.08		
1vqoA	240	26.80	b.34.5.3,b.40.4.5	120361,120362
2pn0A	141	32.53		
1dz1A	70	32.72	b.34.13.2	37473
1y8tA	324	35.16	b.36.1.4,b.47.1.1	122763,122764
1b9cA	236	35.28	d.22.1.1	38358
8abpA	306	35.67	c.93.1.1	35647
1o6gA	710	36.90	b.69.7.1,c.69.1.4	81087,81088
1ecxA	384	44.73	c.67.1.3	34431
2r55A	231	45.40		
1h30A	422	45.99	b.29.1.4,b.29.1.4	76604,76605
1lba	146	47.13		
1s6yA	450	50.89	c.2.1.5,d.162.1.2	105314,105315
2eqkA	85	52.96		
2gw4B	162	53.34		
1uisA	231	55.31	d.22.1.1	99431
2q83A	346	55.53		
1h6rA	236	60.39	d.22.1.1	65683
1te0A	318	62.60	b.36.1.4,b.47.1.1	112400,112401
1eg5A	384	62.78	c.67.1.3	34429
1dpjA	329	65.72	b.50.1.2	26828
1vqoQ	96	65.75	b.34.5.1	120378
1jdpA	441	66.36	c.93.1.1	62906
1oxdA	227	68.01	d.22.1.1	93687
2in0A	139	70.39		
1kypA	237	70.40	d.22.1.1	73280
1n7oA	721	73.67	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
2btlA	134	79.21	b.148.1.1	129154
1lcyA	325	79.36	b.36.1.4,b.47.1.1	73834,73835
1q3lA	69	80.15	b.34.13.2	111652
1x3qA	57	80.53	b.34.13.2	121669
1l1jA	239	84.75	b.47.1.1	84516
1b5fA	239	85.03	b.50.1.2	26836
1jfxA	217	85.60	c.1.8.8	62943