# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g5vA 88 4.807 b.34.9.1 60292 2qmqA 286 4.913 1mhnA 59 6.062 b.34.9.1 84964 2reeA 224 6.776 1czaN 917 8.577 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1lg2A 365 9.828 c.1.8.5,d.26.3.1 77950,77951 1se8A 301 9.839 b.40.4.3 105448 1ji1A 637 9.940 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 2hpuA 175 11.48 2dkhA 639 11.85 1hjxA 362 12.04 c.1.8.5,d.26.3.1 83512,83513 2eqkA 85 13.04 1lrzA 426 13.41 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2psoA 237 15.19 1v4sA 455 15.56 c.55.1.3,c.55.1.3 100309,100310 1s96A 219 15.79 c.37.1.1 98740 1gw1A 376 17.32 c.1.8.3 76361 1vb5A 276 17.79 c.124.1.5 113604 2rh7A 239 18.36 1danT 80 18.40 b.1.2.1 21953 3buuA 229 19.88 1ecfB 504 20.25 c.61.1.1,d.153.1.1 34054,41821 2hx1A 284 20.37 1lba 146 25.12 2gw4B 162 25.26 1kbvA 327 25.98 b.6.1.3,b.6.1.3 68395,68396 1h09A 338 28.37 b.109.1.1,c.1.8.8 83420,83421 1q1uA 144 28.50 b.42.1.1 95608 1sotA 320 29.05 b.36.1.4,b.47.1.1 105852,105853 1umpA 631 29.36 a.102.4.2,a.102.4.2 99619,99620 1sat 471 30.22 2h2tB 175 32.71 1g8aA 227 32.84 c.66.1.3 90506 1dgkN 917 33.52 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33487,33488,33489,33490 2vn6A 151 34.26 1li5A 461 34.69 a.27.1.1,c.26.1.1 73912,73913 1x0hA 112 34.89 d.332.1.1 121547 1ky9A 448 34.98 b.36.1.4,b.47.1.1 73198,73199 1sc6A 404 34.99 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1miqA 375 39.27 b.50.1.2 79151 2cfmA 561 39.52 1f75A 249 39.90 c.101.1.1 59662 2hkdA 320 42.55 2an9A 207 42.71 c.37.1.1 127037 1zc1A 208 43.21 1ris 101 43.88 2g8cO 251 44.65 1hkkA 364 45.30 c.1.8.5,d.26.3.1 90634,90635 2evrA 246 45.72 b.34.11.3,d.3.1.16 132440,132441 1x24A 180 46.93 1dzlA 505 47.71 b.121.6.1 23586 3b3qE 197 48.41 2j6lA 500 49.21 1vluA 468 49.26 c.82.1.1 108864 2q83A 346 49.64 1ecxA 384 50.49 c.67.1.3 34431 2cclA 158 53.81 b.2.2.2 130248 2r3uA 211 53.92 2j8gA 339 54.93 1akyA 220 57.48 c.37.1.1,g.41.2.1 31896,45197 2hbwA 235 58.99 1h4wA 224 59.02 b.47.1.2 65622 1q3lA 69 59.97 b.34.13.2 111652 3bk5A 237 60.03 2qkiC 343 60.18 1louA 101 60.40 d.58.14.1 39323 1od2A 805 60.41 c.14.1.4,c.14.1.4 86821,86822 1s1dA 331 61.36 b.67.3.1 98344 1k8tA 510 61.42 e.41.1.1 68316 1te5A 257 61.87 d.153.1.1 106795 3bwxA 285 62.39 1c8gA 548 63.14 b.121.5.2 23380 2btlA 134 63.92 b.148.1.1 129154 1ct9A 553 64.43 c.26.2.1,d.153.1.1 31616,41834 1h7wA 1025 66.30 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 4dpvZ 584 67.53 b.121.5.2 23377 1agjA 242 68.63 b.47.1.1 25827 3bs4A 260 68.63 2a1fA 247 69.00 c.73.1.3 125991 2i5vO 251 69.45 2cas 548 69.82 2yw2A 424 71.84 2oxgA 108 73.38 1zxmA 400 74.37 2yz1A 120 76.41 1kypA 237 77.34 d.22.1.1 73280 1y9uA 323 78.39 c.94.1.1 116594 1zu0A 529 80.25 1rfsA 139 80.57 b.33.1.1 24434 1qjvA 342 83.11 b.80.1.5 28035 2z8rA 591 83.24 1wb0A 445 83.40 c.1.8.5,d.26.3.1 120825,120826 2rb7A 364 83.57 1qtsA 247 84.75 b.1.10.1,d.105.1.1 22313,40789 1e8nA 710 86.27 b.69.7.1,c.69.1.4 27675,34643 1mqeA 207 86.37 d.113.1.1 91394 1v5vA 401 86.78 b.44.2.1,d.250.1.1 113539,113540 1jv2A 957 87.19 b.1.15.1,b.1.15.1,b.1.15.1,b.69.8.1 67334,67335,67336,67337 1pneA 139 87.74 d.110.1.1 40866 1qydA 313 88.70 c.2.1.2 96583