# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhnA	59	1.207	b.34.9.1	84964
1g5vA	88	5.005	b.34.9.1	60292
2fhdA	153	7.269		
2rh7A	239	8.238		
2av9A	147	9.368	d.38.1.1	127365
1danT	80	12.69	b.1.2.1	21953
1zc1A	208	14.23		
2j5aA	110	15.98		
2btlA	134	20.64	b.148.1.1	129154
1x24A	180	21.00		
1s6yA	450	22.13	c.2.1.5,d.162.1.2	105314,105315
1y8tA	324	30.27	b.36.1.4,b.47.1.1	122763,122764
1vqoK	132	32.01	b.39.1.1	120372
1q3lA	69	33.50	b.34.13.2	111652
1o6gA	710	34.21	b.69.7.1,c.69.1.4	81087,81088
1jdpA	441	34.35	c.93.1.1	62906
2q83A	346	36.36		
2psoA	237	37.89		
1dz1A	70	39.06	b.34.13.2	37473
1ris	101	41.08		
1h30A	422	44.83	b.29.1.4,b.29.1.4	76604,76605
1vqoA	240	47.82	b.34.5.3,b.40.4.5	120361,120362
2eqkA	85	48.15		
2hufA	393	49.10		
1b9cA	236	51.40	d.22.1.1	38358
1louA	101	52.85	d.58.14.1	39323
2hc8A	113	57.56		
2eryA	172	58.05	c.37.1.8	132306
1s96A	219	58.85	c.37.1.1	98740
1lcyA	325	60.65	b.36.1.4,b.47.1.1	73834,73835
8abpA	306	60.73	c.93.1.1	35647
2ofzA	138	62.39		
2oasA	436	63.13		
1obbA	480	64.43	c.2.1.5,d.162.1.2	86760,86761
1ypfA	336	64.50		
2pn0A	141	65.04		
1vqoQ	96	67.80	b.34.5.1	120378
1jfxA	217	68.81	c.1.8.8	62943
1b8oA	284	69.32	c.56.2.1	33762
1ecxA	384	71.74	c.67.1.3	34431
2gw4B	162	72.62		
1te0A	318	74.54	b.36.1.4,b.47.1.1	112400,112401
1lba	146	74.57		
1x3qA	57	75.82	b.34.13.2	121669
1uisA	231	76.09	d.22.1.1	99431
1pfbA	55	76.60	b.34.13.2	94655
2h1eA	177	77.98		
2r55A	231	78.67		
1h6rA	236	80.98	d.22.1.1	65683
1kypA	237	83.05	d.22.1.1	73280
1oxdA	227	85.16	d.22.1.1	93687