# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhnA	59	2.300	b.34.9.1	84964
2rh7A	239	4.595		
1g5vA	88	4.905	b.34.9.1	60292
2fhdA	153	7.384		
2av9A	147	10.62	d.38.1.1	127365
1danT	80	11.76	b.1.2.1	21953
1zc1A	208	15.61		
1vqoA	240	15.89	b.34.5.3,b.40.4.5	120361,120362
2j5aA	110	19.09		
1jdpA	441	20.52	c.93.1.1	62906
2gw4B	162	21.69		
1vqoK	132	30.14	b.39.1.1	120372
2pn0A	141	36.64		
1te0A	318	37.75	b.36.1.4,b.47.1.1	112400,112401
1x24A	180	37.82		
1h30A	422	38.12	b.29.1.4,b.29.1.4	76604,76605
2eqkA	85	38.45		
2psoA	237	42.80		
1b9cA	236	43.91	d.22.1.1	38358
1louA	101	44.46	d.58.14.1	39323
1ris	101	46.07		
1lcyA	325	46.10	b.36.1.4,b.47.1.1	73834,73835
1o6gA	710	46.23	b.69.7.1,c.69.1.4	81087,81088
1fnoA	417	48.50	d.58.19.1,c.56.5.4	70145,75841
1jj2A	239	49.33	b.34.5.3,b.40.4.5	63084,63085
1h6rA	236	49.47	d.22.1.1	65683
1vqoQ	96	50.50	b.34.5.1	120378
1y8tA	324	54.67	b.36.1.4,b.47.1.1	122763,122764
1uisA	231	55.04	d.22.1.1	99431
1kypA	237	56.16	d.22.1.1	73280
1oxdA	227	56.20	d.22.1.1	93687
2a90A	240	57.03		
2r55A	231	59.00		
1xcbA	211	59.35	a.4.5.38,c.2.1.12	109552,109553
2q83A	346	62.84		
1ecxA	384	65.98	c.67.1.3	34431
1lba	146	66.32		
1kbvA	327	66.97	b.6.1.3,b.6.1.3	68395,68396
1jg1A	235	67.47	c.66.1.7	66661
2btlA	134	71.37	b.148.1.1	129154
1dz1A	70	73.10	b.34.13.2	37473
1sotA	320	74.55	b.36.1.4,b.47.1.1	105852,105853
2p0pA	126	77.51		
1wi5A	119	83.06	b.40.4.5	114661
2eryA	172	84.03	c.37.1.8	132306
1l1jA	239	84.31	b.47.1.1	84516
2ovsA	118	88.60		
1jfxA	217	89.37	c.1.8.8	62943