# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l1jA 239 5.827 b.47.1.1 84516 2fhdA 153 6.866 2bkdN 134 7.965 1jt8A 102 9.388 b.40.4.5 63279 1fd9A 213 10.49 d.26.1.1 59771 1am2 199 12.16 1sawA 225 12.40 d.177.1.1 112050 1q6uA 245 14.22 d.26.1.1 95998 1wzoA 246 14.81 1vhyA 257 14.90 b.122.1.2,c.116.1.5 100714,100715 1d7qA 143 15.00 b.40.4.5 25331 1y8tA 324 16.92 b.36.1.4,b.47.1.1 122763,122764 2pfuA 99 18.25 2f4eA 180 19.29 1q46A 175 20.61 a.60.14.1,b.40.4.5 111594,111595 1gcb 454 21.35 2zbvA 263 21.94 3gcb 470 23.30 2ii1A 301 26.63 2ixeA 271 27.10 1bdo 80 27.61 1cskA 71 27.67 b.34.2.1 24513 2ho9A 167 28.37 1yezA 68 28.72 b.40.4.12 123026 1kl9A 182 29.29 a.60.14.1,b.40.4.5 111574,111575 2e8gA 241 29.77 1hqz1 141 29.80 2rcfA 91 30.77 1xi7A 61 31.10 g.3.6.5 115348 1wfyA 104 31.60 d.15.1.5 114597 2oqkA 117 33.96 1korA 400 34.16 c.26.2.1,d.210.1.1 72824,72825 1agjA 242 34.54 b.47.1.1 25827 1crzA 403 35.25 b.68.4.1,c.51.2.1 27629,33211 2o8lA 274 35.53 b.47.1.1 138932 2a19A 175 35.56 1bdoA 80 35.64 b.84.1.1 28214 2raaA 204 35.97 1f39A 101 36.89 b.87.1.1 28386 1qcoA 423 39.27 b.34.8.1,d.177.1.1 59021,59022 1yvcA 70 40.16 b.40.4.12 124094 1bb9 115 40.35 2nptA 106 41.41 d.15.2.2 138448 1kzlA 208 43.30 b.43.4.3,b.43.4.3 77635,77636 2fcoA 200 43.51 1zp7A 206 44.26 1y0bA 197 46.04 c.61.1.1 122476 2cvbA 188 48.50 c.47.1.10 130859 1jegA 83 48.66 b.34.2.1 66610 1h9jA 145 49.45 b.40.6.2,b.40.6.2 60829,60830 1wjnA 97 49.59 d.15.1.1 114703 2f8mA 244 52.00 1ckaA 57 53.74 b.34.2.1 24459 2apsA 162 53.81 b.1.8.1 22298 1psqA 163 54.30 c.47.1.10 88283 1xvqA 175 54.38 c.47.1.10 116094 1eujA 166 55.54 b.40.4.4 25316 2f5kA 102 55.56 b.34.13.3 132995 7odcA 424 55.94 b.49.2.3,c.1.6.1 26488,28650 1z85A 234 56.66 1d0nA 729 57.64 d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1 40834,40835,40836,40837,40838,40839 2dbnA 461 58.49 1i8dA 213 58.64 b.43.4.3,b.43.4.3 61953,61954 1rznA 205 59.30 c.52.1.28 111981 2ak5A 64 60.05 1am2A 199 60.14 b.86.1.2 28381 2pth 193 61.99 1lk5A 229 62.55 c.124.1.4,d.58.40.1 73960,73961 2cwpA 112 64.90 1fl0A 171 65.18 b.40.4.4 25315 2eveA 157 66.93 b.122.1.8 132427 2qlcA 126 68.32 1hyoA 421 69.38 b.34.8.1,d.177.1.1 59001,59002 1nxzA 246 69.39 b.122.1.2,c.116.1.5 86391,86392 2h5cA 198 69.65 b.47.1.1 136145 1ky9A 448 73.57 b.36.1.4,b.47.1.1 73198,73199 1ssxA 198 75.52 b.47.1.1 98978 1k12A 158 77.50 b.18.1.15 71978 1oebA 62 77.68 b.34.2.1 86909 2je6I 251 77.69 1vqoA 240 77.87 b.34.5.3,b.40.4.5 120361,120362 2awgA 118 78.14 2a74A 643 80.09 1bb9A 115 80.43 b.34.2.1 24554 1qqjA 419 81.86 b.34.8.1,d.177.1.1 59034,59035 1kcqA 104 87.23 d.109.1.1 68449 1wi0A 113 88.28 d.15.2.2 114657 1ywuA 149 88.41 b.45.2.1 124164 1azgB 67 89.64 b.34.2.1 24471