(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0429
    • gi|73987094|ref|XP_868462.1|_164:253 PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 isoform 4 [Canis familiaris]
    • gi|73987090|ref|XP_868453.1|_164:253 PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 isoform 2 [Canis familiaris]
    • gi|73987096|ref|XP_854422.1|_164:253 PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 isoform 1 [Canis familiaris]
    • gi|73987092|ref|XP_868458.1|_164:253 PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 isoform 3 [Canis familiaris]
    • gi|73987098|ref|XP_868468.1|_164:253 PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 isoform 5 [Canis familiaris]
    • gi|119589595|gb|EAW69189.1|_225:314 ubiquitin-like, containing PHD and RING finger domains, 1, isoform CRA_c [Homo sapiens]
    • gi|109123024|ref|XP_001082893.1|_161:252 PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 isoform 2 [Macaca mulatta]
    • gi|109123026|ref|XP_001082762.1| PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 isoform 1 [Macaca mulatta]
    • gi|109123028|ref|XP_001083019.1| PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 isoform 3 [Macaca mulatta]
    • gi|109123030|ref|XP_001083134.1| PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 isoform 4 [Macaca mulatta]
    • gi|148709750|gb|EDL41696.1|_279:369 ubiquitin-like, containing PHD and RING finger domains 2, isoform CRA_a [Mus musculus]
    • gi|124430766|ref|NP_659122.2|_186:276 ubiquitin-like, containing PHD and RING finger domains 2 [Mus musculus]
    • gi|67462063|sp|Q7TMI3|UHRF2_MOUSE E3 ubiquitin-protein ligase UHRF2 (Ubiquitin-like PHD and RING finger domain-containing protein 2) (Ubiquitin-like-containing PHD and RING finger domains protein 2) (Np95-like ring finger protein) (Nuclear zinc finger protein Np97) (NIRF) [Taxonomy]
    • gi|33589239|dbj|BAC81739.1| Np95-like ring finger protein [Mus musculus]
    • gi|37805363|gb|AAH60241.1| Ubiquitin-like, containing PHD and RING finger domains 2 [Mus musculus]
    • gi|148709751|gb|EDL41697.1| ubiquitin-like, containing PHD and RING finger domains 2, isoform CRA_b [Mus musculus]
    • gi|67461836|sp|Q7TPK1|UHRF1_RAT_157:246 E3 ubiquitin-protein ligase UHRF1 (Ubiquitin-like PHD and RING finger domain-containing protein 1) (Ubiquitin-like-containing PHD and RING finger domains protein 1) (Liver regeneration-related protein LRRG126) [Taxonomy]
    • gi|148706214|gb|EDL38161.1|_201:290 ubiquitin-like, containing PHD and RING finger domains, 1, isoform CRA_a [Mus musculus]
    • gi|73970966|ref|XP_851749.1|_186:276 PREDICTED: similar to Ubiquitin-like containing PHD and RING finger domains protein 2 (Np95-like ring finger protein) (Nuclear zinc finger protein Np97) (NIRF) isoform 2 [Canis familiaris]
    • gi|73970976|ref|XP_531928.2|_186:276 PREDICTED: similar to Ubiquitin-like containing PHD and RING finger domains protein 2 (Np95-like ring finger protein) (Nuclear zinc finger protein Np97) (NIRF) isoform 1 [Canis familiaris]
    • gi|118103345|ref|XP_418269.2|_144:233 PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 [Gallus gallus]
                     10                20          30           40     
                     |                 |           |            |     
   1 ...RKAPSR....DEPCS.ST...SRPA.LE...ED..VIYHVKYDDYPE...NGVVQMNSRDVR
   2 rvtRKAPSQ....DEPCS.ST...SSST.PE...DD..VIYHVKYDDYPE...NGVVQMSSRDVR
   3 rvtRKAPSQ....DEPCS.ST...SSST.PE...DD..VIYHVKYDDYPE...NGVVQMSSRDVR
   4 rvtRKAPSQ....DEPCS.ST...SSST.PE...DD..VIYHVKYDDYPE...NGVVQMSSRDVR
   5 rvtRKAPSQ....DEPCS.ST...SSST.PE...DD..VIYHVKYDDYPE...NGVVQMSSRDVR
   6 rvtRKAPSQ....DEPCS.ST...SSST.PE...DD..VIYHVKYDDYPE...NGVVQMSSRDVR
   7 rvtRKAPSR....DEPCS.ST...SRPA.LE...ED..VIYHVKYDDYPE...NGVVQMNSRDVR
   8 rvtRKAPSR....DEPCS.ST...SRPA.LE...ED..VIYHVKYDDYPE...NGVVQMNSRDVR
   9 rvtRKAPSR....DEPCS.ST...SRPA.LE...ED..VIYHVKYDDYPE...NGVVQMNSRDVR
  10 rvtRKAPSR....DEPCS.ST...SRPA.LE...ED..VIYHVKYDDYPE...NGVVQMNSRDVR
  11 rvtRKAPSR....DEPCS.ST...SRPA.LE...ED..VIYHVKYDDYPE...NGVVQMNSRDVR
  12 rvtRKAPSR....DEPCS.ST...SRPA.LE...ED..VIYHVKYDDYPE...NGVVQMNSRDVR
  13 rvtRKAPSR....DEPCS.ST...SRPA.LE...ED..VIYHVKYDDYPE...NGVVQMNSRDVR
  14 rvtRKAPSR....DEPCS.ST...SRPA.LE...ED..VIYHVKYDDYPE...NGVVQMNSRDVR
  15 rvtRKAPSR....DEPCS.ST...SSPA.LE...EDadVIYHVKYDDYPE...NGVVQMNSRDVR
  16 skeNTNKLD....NVPST.SN...SDSVaAD...ED..VIYHIEYDEYPE...SGILEMNVKDLR
  17 skeNTNKLD....NVPST.SN...SDSVaAD...ED..VIYHIEYDEYPE...SGILEMNVKDLR
  18 skeNTNKLD....NVPST.SN...SDSVaAD...ED..VIYHIEYDEYPE...SGILEMNVKDLR
  19 skeNTNKLD....NVPST.SN...SDSVaAD...ED..VIYHIEYDEYPE...SGILEMNVKDLR
  20 skeNTNKLD....NVPST.SN...SDSVaAD...ED..VIYHIEYDEYPE...SGTLEMNAKELR
  21 skeNTNKLD....SVPST.SN...SDCVaAD...ED..VIYHIQYDEYPE...SGTLEMNVKDLR
  22 skeNTNKLD....SVPST.SN...SDCVaAD...ED..VIYHIQYDEYPE...SGTLEMNVKDLR
  23 skeNTNKLD....SVPST.SN...SDCVaAD...ED..VIYHIQYDEYPE...SGTLEMNVKDLR
  24 skeNTNKLD....SVPST.SN...SDCVaAD...ED..VIYHIQYDEYPE...SGTLEMNVKDLR
  25 skeNTNKLD....SVPST.SN...SDCVaAD...ED..VIYHIQYDEYPE...SGTLEMNVKDLR
  26 skeNTNKLD....NVPST.SN...SDSVaAD...ED..VIYHIEYDEYPE...SGTVEINVKDLR
  27 qvqKKALSE....EEPCS.SS...AIMA.PE...DD..IMYHIKYDDYPE...HGVDIVKAKNVR
  28 qvqKKALSE....EEPCS.SS...AIMA.PE...DD..IMYHIKYDDYPE...HGVDIVKAKNVR
  29 qvqKKALSE....EEPCS.SS...AIMA.PE...DD..IMYHIKYDDYPE...HGVDIVKAKNVR
  30 qvqKRALSE....DEPCS.SS...AVKT.SE...DD..IMYHVKYDDYPE...HGVDIVKAKNVR
  31 qvqKRALSE....DEPCS.SS...AVKT.SE...DD..IMYHVKYDDYPE...HGVDIVKAKNVR
  32 qvqKRALSE....DEPCS.SS...AVKT.SE...DD..IMYHVKYDDYPE...HGVDIVKAKNVR
  33 qvqKRALSE....DEPCS.SS...AVKT.SE...DD..IMYHVKYDDYPE...HGVDIVKAKNVR
  34 qvqKRALSE....DEPCS.SS...AVKT.SE...DD..IMYHVKYDDYPE...HGVDIVKAKNVR
  35 qvqKRALSE....DEPCS.SS...AVKT.SE...DD..IMYHVKYDDYPE...HGVDIVKAKNVR
  36 qvqKRALSE....DEPCS.SS...AVKT.SE...DD..IMYHVKYDDYPE...HGVDIVKAKNVR
  37 qvqKRALSE....DEPCS.SS...AVKT.SE...DD..IMYHVKYDDYPE...HGVDIVKAKNVR
  38 skeNTKKLD....NVPST.SN...SDSVaAD...ED..VIYHIEYDEYPE...SGTVEINVKDLR
  39 qvqKRALSE....DEPCS.SS...AVKT.SE...DD..IMYHVKYDDYPE...HGVDIVKAKNVR
  40 vtrNTNKLD....SVPST.SN...SDSVaAD...ED..VIYHIEYDEYPE...SGTVEINVKDLR
  41 vtrNTNKLD....SVPST.SN...SDSVaAD...ED..VIYHIEYDEYPE...SGTVEINVKDLR
  42 skeNTNKLD....SVPST.SN...SDSVaAD...ED..VIYHIEYDEYPE...SGTVEINVKDLR
  43 skeNTNKLD....SVPST.SN...SDSVaAD...ED..VIYHIEYDEYPE...SGTVEINVKDLR
  44 dlnMGAWFE....AQIVK.VT...KTPA.EDggaED..IVYHVKYEDYPE...NGVVQLRGKDVR
  45 nvtRKEREA....SESSD.NE...DGQV.AE...ED..VIYHVKYEDYPE...NGVVKLSSKDVR
  46 sreNTNNLD....SAPST.SY...SDSM.DT...EE..AIYHIKYDEYPE...NGIIEMGASNLR
  47 dlnMGAWFE....AQIVK.VT...KTPA.EDggaES..IVYHVKYEDYPE...NGVVQLRGKDVR
  48 srgNTNKLD....SAPST.SP...SNSM.NS...ED..IIYHIEYDEYPE...NGIIEMRSKNLR
  49 srgNTNKLD....SAPST.SP...SNSM.NS...ED..IIYHIEYDEYPE...NGIIEMRSKNLR
  50 nvsKKVGPY....GTLPE.VS...DTSV.TS...DA..IIYHVKYEDYPE...NGVVQLTCKDVR
  51 nvsKKVGPY....GTLPE.VS...DTSV.TS...DA..IIYHVKYEDYPE...NGVVQLTCKDVR
  52 nvsKKVGPY....GTLPE.VS...DTSV.TS...DA..IIYHVKYEDYPE...NGVVQLTCKDVR
  53 dlnMGAWFE....AQIVK.VT...KTPA.EDggpEE..IVYHVKYEDYPE...NGVVQLRGKDVR
  54 vtrRKAANE....SCAVA.DQ...QTTI.PE...ED..VIYHVKYEDYPE...NGVVELSSNDVR
  55 rvtRKAPAH....DQPSS.SS...SK--.PE...DD..IIYHVTYDDYPE...NGVVQMTSQNVR
  56 dvgLGAWFE....ARIRS.VT...RASDgHS...RD..VIYHIEYDEYPE...SGTVEINVKDLR
  57 dvgLGAWFE....ARIRS.VT...RASDgHS...RD..VIYHIEYDEYPE...SGTVEINVKDLR
  58 qivNVTKTP....KTPEE.GA...GEGR.AE...EE..ILYHVKFEDYPE...NGVIQLLGKDVR
  59 sreNSHAVD....TNPST.SY...NDIL.DEd..EN..VIYHIKYDDYPE...NGLVEMDLSNLR
  60 ehsRENVVD....TNPST.SY...NDIL.DDn..EN..VIYHIKYDDYPE...NGLVEMDLSNLR
  61 p..ESNGAS....TSRTD.STaaaETKE.RE...ED..AVYHIKYEDYPE...NGVVAMKPVDVR
  62 qvqKRALSE....DEPCS.SS...AVKT.SE...DD..IMYHV---NYPE...HGVDIVKAKNVR
  63 ...QTSTNT....HTHTD.SStaaDRLT.TDsstDR..VSYHIRYEDYPE...NGVVEMSVSDVR
  64 dpsMGAWFE....AEIVDiSL...KDES.DP...ES..VLYHVKYDGYEE...DEINKLPGRDIR
  65 lkeGGSGVI....QIAGK.HD...SHWT.RH...DG..LIYHVKYEGYDE...EGIAKISSRSIR
  66 dtdVGAWFE....AKVVN.VT...KGKT.--...DG..LDYHIKFDDYGD...DGVKVVGEKLIR
  67 dnaLGAWFE....AVIV-.--...KIFT.KS...EK..LFYKVRWD-LPEtknDEPFNIEEKFIR
  68 dsdHGAWFEakilGIFKP.KE...TENA.DE...KD..LTFRIKMDRNGN...TAAFDVTFSEIR
  69 ...------....-----.--...----.--...--..------------...-----MNVKDLR
  70 ...------....-----.--...----.--...--..------------...-----MNVKDLR


         50        60        70        80          90   
         |         |         |         |           |   
   1 ARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETR...
   2 ARARNILKWQELEVGQVVMLNYNPDNPKERGFWYDAEI..LRKRETRtar
   3 ARARNILKWQELEVGQVVMLNYNPDNPKERGFWYDAEI..LRKRETRtar
   4 ARARNILKWQELEVGQVVMLNYNPDNPKERGFWYDAEI..LRKRETRtar
   5 ARARNILKWQELEVGQVVMLNYNPDNPKERGFWYDAEI..LRKRETRtar
   6 ARARNILKWQELEVGQVVMLNYNPDNPKERGFWYDAEI..LRKRETRtar
   7 ARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETRtar
   8 ARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETRtar
   9 ARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETRtar
  10 ARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETRtar
  11 ARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETRtar
  12 ARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETRtar
  13 ARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETRtar
  14 ARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETRtar
  15 ARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETRtar
  16 PRARTILKWNELNVGDVVMVNYNVENPGKRGFWYDAEI..TTLKTISrtk
  17 PRARTILKWNELNVGDVVMVNYNVENPGKRGFWYDAEI..TTLKTISrtk
  18 PRARTILKWNELNVGDVVMVNYNVENPGKRGFWYDAEI..TTLKTISrtk
  19 PRARTILKWNELNVGDVVMVNYNVENPGKRGFWYDAEI..TTLKSISrsk
  20 PRARTILKWNELNVGDVVMVNYNVENPGKRGFWYDAEI..TTLKTISrtk
  21 PRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEI..TTLKTISrtk
  22 PRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEI..TTLKTISrtk
  23 PRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEI..TTLKTISrtk
  24 PRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEI..TTLKTISrtk
  25 PRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEI..TTLKTISrtk
  26 PRARTTLKWNELNVGDVVMVNYNVENPGNRGFWFDAEI..TALKTISrtk
  27 ARARTVIPWEDLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  28 ARARTVIPWEDLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  29 ARARTVIPWEDLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  30 ARARTVIPWENLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  31 ARARTVIPWENLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  32 ARARTVIPWENLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  33 ARARTVIPWENLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  34 ARARTVIPWENLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  35 ARARTVIPWENLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  36 ARARTVIPWENLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  37 ARARTVIPWENLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  38 PRARTTLRWNELNVGDVVMVNYNVESPSNRGFWFDAEI..TTLKTISrtk
  39 ARARTVIPWENLKVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  40 PRARTNLKWNELNVGDVVMVNYSVENPGNRGFWFDAEI..TALKTISrtk
  41 PRARTNLKWNELNVGDVVMVNYSVENPGNRGFWFDAEI..TALKTISrtk
  42 PRARTNLKWNELNVGDVVMVNYSVENPGNRGFWFDAEI..TALKTISrtk
  43 PRARTNLKWNELNVGDVVMVNYSVENPGNRGFWFDAEI..TALKTISrtk
  44 PRARTVYQWHQLEPGMIVMVNYNPDDPKERGYWYDAEI..QRKRETRtqr
  45 ARARTILKWHQLEVGQIVMVNYNPDEPKERGFWYDAEI..LRKRETRtvk
  46 PRARTILKWNELNVGDVVMVNYNVETPEERGFWFDAEI..TTLREISrtn
  47 PRARTVYQWHQLEPGMIVMVNYNPDDPKERGYWYDAEI..QRKRETRtqr
  48 PRARKTLKWNELKVGDLVMVNYNVDTPEERGFWYDAEI..TTLKEISrtn
  49 PRARKTLKWNELKVGDLVMVNYNVDTPEERGFWYDAEI..TTLKEISrtn
  50 LRARTTLPWHEIKVGQVVMVNYNPDEPKERGYWYDAEI..LRKHESKkik
  51 LRARTTLPWHEIKVGQVVMVNYNPDEPKERGYWYDAEI..LRKHESKkik
  52 LRARTTLPWHEIKVGQVVMVNYNPDEPKERGYWYDAEI..LRKHESKkik
  53 PRARTVYQWRQLEPGMIVMVNYNPDDPKERGYWYDAEI..QRKRETRtqr
  54 SRARTILKWHQLEVGQVVMVNYNPDEPTERGFWYDAEI..LQKRETKlir
  55 ARARHTIKWEDLQVGQVVMVNYNPDLPKDRGFWYDAEI..LRKRETRtar
  56 PRARTNLKWNELNVGDVVMVNYSVENPGNRGFWFDAEI..TALKTISrtk
  57 PRARTNLKWNELNVGDVVMVNYSVENPGNRGFWFDAEI..TALKTISrtk
  58 PRARTVYQWHQLEAGMIVMVNYNPDDPKERGYWYDAEI..QRKRETRtlr
  59 PRARTLLKWSDLKTGDKVMVNYNVETPEERGFWFDAEI..TELKEMSrtn
  60 PRARTLLKWSDLKIGDKVMVNYNVETPEERGFWFDAEI..TNLKEMSrtn
  61 PRARTLLRWDQLQVGMRVMVNYNLETPEERGFWFDAEV..QTVNQTSrts
  62 ARARTVIPWENLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  63 PRARTLLRFDQLSVGDVVMVNHNLELPEERGFWYDAEI..TALNAVSrtn
  64 PRARKRLQWDQLSVGQVVMANYCPDEPKERGFWYDVQI..TKKHSKQitq
  65 PRARTMIDYEDVNVGDIVMVNYNCDEPKQRGYWYDMVV..KNKKETRsyk
  66 PRARKLLEWNEIEVTSKVMANYNMDHPKERGFWYDCVV..LDKKNKRkkn
  67 PRAWKVLNFNDLDIGQKVMVNYNLEDPKEIGNWYDFTI..SKIKNTKsak
  68 PRAYYTYHKSELTPGVIVLANYNIEEPTSRGYWYDFEIkeITKKGIKgal
  69 PRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEI..TTLKTISrtk
  70 PRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEI..TTLKTISrtk