# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1gvhA	396	5.979	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1krhA	338	9.022	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1s96A	219	16.34	c.37.1.1	98740
1vk1A	242	18.22	d.268.1.2	108634
2qqrA	118	18.75		
2bemA	170	19.24	b.1.18.2	116698
2hxwA	237	22.90		
2f69A	261	25.23	b.76.2.1,b.85.7.1	133035,133036
1l5wA	796	26.39	c.87.1.4	73605
2fmmA	74	29.74	b.34.13.2	133782
1xu1R	42	30.01	g.24.1.2	116036
1a8pA	258	30.27	b.43.4.2,c.25.1.1	25654,31544
1ok0A	74	30.35	b.5.1.1	93191
1em2A	229	30.94	d.129.3.2	41321
2an9A	207	32.37	c.37.1.1	127037
2rkqA	169	32.60		
2eaxA	164	32.62		
2j5aA	110	37.77		
1xcbA	211	40.10	a.4.5.38,c.2.1.12	109552,109553
1v0aA	178	41.71	b.18.1.30	119815
1ohtA	215	43.36	d.118.1.1	87036
1gx5A	536	44.97	e.8.1.4	70682
1pfbA	55	46.30	b.34.13.2	94655
1n6aA	259	46.37	b.76.2.1,b.85.7.1	80121,80122
1fdr	248	49.04		
1q5yA	85	49.06	d.58.18.4	95950
1q3lA	69	49.56	b.34.13.2	111652
1am2A	199	50.42	b.86.1.2	28381
2qdxA	257	53.31		
1twfB	1224	57.72	e.29.1.1	112726
2oh1A	179	58.53		
1qfjA	232	64.32	b.43.4.2,c.25.1.1	25655,31545
1vmaA	306	67.19	a.24.13.1,c.37.1.10	108887,108888
2bgiA	272	68.02		
2g39A	497	70.26	c.124.1.2,c.124.1.2	134553,134554
1fdrA	248	72.68	b.43.4.2,c.25.1.1	25653,31543
2hc8A	113	75.42		
1aohA	147	75.44	b.2.2.2	22401
1fcyA	236	75.57	a.123.1.1	19282
2ozvA	260	78.83		
2oasA	436	79.23		
3bs2A	148	80.80		
1vqoA	240	81.24	b.34.5.3,b.40.4.5	120361,120362
1ju2A	536	82.59	c.3.1.2,d.16.1.1	77169,77170
2j41A	207	83.50		
2ok8A	316	84.41		
2eavA	165	85.05		
2evrA	246	85.10	b.34.11.3,d.3.1.16	132440,132441
2hd9A	145	85.37		
2csgA	424	86.50	b.82.2.12	130768
1lshA	1056	86.78	a.118.4.1,f.7.1.1,f.7.1.1	74242,74243,74244
1rewC	135	88.34	g.7.1.3	97336