# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1q3lA 69 2.122 b.34.13.2 111652 1em2A 229 3.205 d.129.3.2 41321 2evrA 246 3.877 b.34.11.3,d.3.1.16 132440,132441 2hc8A 113 4.059 1s96A 219 4.286 c.37.1.1 98740 1am2A 199 4.297 b.86.1.2 28381 1gvhA 396 5.314 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2qqrA 118 5.640 1pfbA 55 6.435 b.34.13.2 94655 1xu1R 42 7.412 g.24.1.2 116036 1fdr 248 7.564 2hbwA 235 7.883 2c71A 216 9.381 c.6.2.3 130017 2j5aA 110 11.47 1at0A 145 11.62 b.86.1.1 28374 1l5wA 796 11.80 c.87.1.4 73605 1ok0A 74 12.53 b.5.1.1 93191 2hd9A 145 12.64 2f3nA 76 13.46 a.60.1.2 132885 2jm1A 141 13.68 1xcbA 211 14.08 a.4.5.38,c.2.1.12 109552,109553 1a8pA 258 14.59 b.43.4.2,c.25.1.1 25654,31544 1msoB 30 14.91 g.1.1.1 85092 1at0 145 15.08 2psoA 237 15.49 1fdrA 248 16.03 b.43.4.2,c.25.1.1 25653,31543 1ep3B 262 16.06 b.43.4.2,c.25.1.3 25664,31554 2ok8A 316 17.14 2an9A 207 17.61 c.37.1.1 127037 2ee1A 64 17.67 3d1cA 369 17.74 2qjlA 99 18.09 1ae9A 179 18.47 d.163.1.1 42153 1qcsA 211 19.30 b.52.2.3,d.31.1.1 26927,38461 1fjjA 159 19.31 b.17.1.2 59852 1krhA 338 19.47 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1z85A 234 19.57 2bjrA 368 20.48 b.169.1.1,b.169.1.1 128628,128629 2ojwA 384 20.97 2gfaA 119 21.24 b.34.9.1,b.34.9.1 135089,135090 2bsxA 253 21.43 c.56.2.1 129128 2opkA 112 21.76 2eveA 157 22.97 b.122.1.8 132427 1tcvA 287 23.01 2h8gA 267 24.61 2hl5C 97 24.65 1nofA 383 24.71 b.71.1.2,c.1.8.3 92020,92021 2gt1A 326 25.08 2a28A 54 25.38 2rdeA 251 26.00 2nwfA 141 26.19 2bemA 170 26.51 b.1.18.2 116698 2qdxA 257 26.74 1vqoK 132 27.43 b.39.1.1 120372 1k5nB 100 28.21 b.1.1.2 77268 2f60K 64 28.50 2egvA 229 28.78 2vqeQ 105 30.26 1vqoA 240 30.29 b.34.5.3,b.40.4.5 120361,120362 1xmtA 103 31.90 d.108.1.1 115561 2qjoA 341 32.06 2fmmA 74 33.14 b.34.13.2 133782 1sesA 421 33.41 a.2.7.1,d.104.1.1 15710,40710 1uscA 178 33.49 b.45.1.2 99860 2glwA 92 34.62 2p2sA 336 35.73 1vhyA 257 36.44 b.122.1.2,c.116.1.5 100714,100715 2f69A 261 36.56 b.76.2.1,b.85.7.1 133035,133036 1qe5A 266 36.84 c.56.2.1 33784 2as9A 210 37.67 3c5tA 122 38.66 1ryaA 160 38.98 d.113.1.5 105122 3c2qA 345 39.22 2yxdA 183 39.25 2bgiA 272 39.68 2jw5A 106 40.37 1g2oA 268 40.45 c.56.2.1 60228 2dgmA 466 40.63 c.67.1.6 131508 2jg0A 535 40.99 2g3rA 123 41.03 b.34.9.1,b.34.9.1 134570,134571 1k0wA 231 41.29 c.74.1.1 77220 1gppA 237 41.74 b.86.1.2 76262 2nzhA 113 42.26 1nxmA 197 43.37 b.82.1.1 86385 1zc1A 208 43.84 2eixA 243 43.91 2b2yA 187 44.39 b.34.13.2,b.34.13.2 127754,127755 1b8oA 284 45.31 c.56.2.1 33762 2f23A 156 46.40 a.2.1.1,d.26.1.2 132797,132798 1am2 199 46.97 2qf3A 243 47.05 2bkdN 134 47.32 2dqsA 995 48.54 1lcyA 325 48.61 b.36.1.4,b.47.1.1 73834,73835 1q5yA 85 48.66 d.58.18.4 95950 2eulA 156 49.70 a.2.1.1,d.26.1.2 132392,132393 1bco 327 50.24 1mhnA 59 50.74 b.34.9.1 84964 2p3yA 491 50.91 1jcfA 344 52.30 c.55.1.1,c.55.1.1 62878,62879 1fuxA 166 53.25 b.17.1.2 60034 2ey4C 82 53.74 b.43.3.5 132582 2bneA 241 53.87 c.73.1.3 128824 1kzlA 208 54.38 b.43.4.3,b.43.4.3 77635,77636 2dgkA 452 55.05 2dyqA 144 55.29 2r55A 231 55.47 3bjeA 349 55.87 1u8xX 472 56.56 c.2.1.5,d.162.1.2 107741,107742 1n6aA 259 57.12 b.76.2.1,b.85.7.1 80121,80122 1gx5A 536 57.77 e.8.1.4 70682 1wleA 501 57.83 1wpgA 994 58.33 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 2pkpA 170 58.50 1tovA 98 58.80 b.34.10.1 107179 1ju2A 536 59.55 c.3.1.2,d.16.1.1 77169,77170 1i8dA 213 59.60 b.43.4.3,b.43.4.3 61953,61954 1sqwA 188 59.68 b.122.1.1,d.17.6.3 119033,119034 1pmmA 466 60.33 c.67.1.6 94901 2c6qA 351 62.23 2z1cA 75 62.88 2imlA 199 66.72 1jysA 242 67.77 c.56.2.1 77216 2gz4A 207 67.79 1zosA 230 67.85 2r3aA 300 69.53 1twfB 1224 69.94 e.29.1.1 112726 2j41A 207 71.43 3bs2A 148 71.87 2e5yA 133 72.38 2cw8A 537 73.35 1v0aA 178 73.45 b.18.1.30 119815 1kl9A 182 74.29 a.60.14.1,b.40.4.5 111574,111575 2r6hA 290 74.36 1vmkA 277 74.85 c.56.2.1 113680 1konA 249 76.08 e.39.1.1 72823 2iizA 312 76.20 d.58.4.14 137444 2aytA 237 78.14 1fuiA 591 80.22 b.43.2.1,c.85.1.1 25674,35444 2jg1A 330 80.61 2c5uA 375 80.81 1o75A 415 81.73 b.1.20.1,b.1.20.1,b.120.1.1 81117,81118,81119 2bzeA 153 82.54 1v2xA 194 82.70 c.116.1.1 100274 1agjA 242 83.21 b.47.1.1 25827 1xttA 216 83.63 c.61.1.1 122300 1g4wR 383 83.94 a.24.11.1,c.45.1.2 16644,32692 2hqxA 246 84.24 b.34.9.1 136675 2pofA 227 84.67 2csgA 424 85.16 b.82.2.12 130768 2yyoA 171 86.58 2iqgA 406 86.59 b.50.1.2 137588 1qstA 160 86.96 d.108.1.1 40804 2eqjA 66 87.08 1te0A 318 88.26 b.36.1.4,b.47.1.1 112400,112401 2oq0A 206 89.54 1wkrA 340 89.88 b.50.1.2 109395