# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1wb0A 445 1.914 c.1.8.5,d.26.3.1 120825,120826 1hs6A 611 2.025 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1s96A 219 2.052 c.37.1.1 98740 1ecfA 504 2.955 c.61.1.1,d.153.1.1 34053,41820 1em2A 229 4.814 d.129.3.2 41321 1vkhA 273 5.225 c.69.1.32 108662 2e27H 126 5.884 2an9A 207 6.265 c.37.1.1 127037 1n6aA 259 9.173 b.76.2.1,b.85.7.1 80121,80122 1k5nB 100 10.01 b.1.1.2 77268 1h09A 338 11.34 b.109.1.1,c.1.8.8 83420,83421 2hxwA 237 11.58 2psoA 237 11.78 3c96A 415 12.88 1i0dA 332 13.32 c.1.9.3 61487 2rkqA 169 13.39 1v2xA 194 14.79 c.116.1.1 100274 2uwxA 494 14.95 e.3.1.1 140002 2h2tB 175 15.10 2hu5A 582 15.22 b.69.7.2,c.69.1.33 136763,136764 2iqgA 406 15.45 b.50.1.2 137588 1qhoA 686 17.11 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1vmaA 306 18.45 a.24.13.1,c.37.1.10 108887,108888 1lba 146 20.70 1fdrA 248 21.27 b.43.4.2,c.25.1.1 25653,31543 2p3yA 491 21.32 2evrA 246 21.67 b.34.11.3,d.3.1.16 132440,132441 1se8A 301 22.48 b.40.4.3 105448 2z8gA 549 23.40 2h8gA 267 24.13 1q3lA 69 24.38 b.34.13.2 111652 2oh1A 179 26.12 1pfbA 55 27.42 b.34.13.2 94655 1pjxA 314 27.89 b.68.6.1 104167 3bb7A 321 29.67 2uyeA 307 30.03 2eavA 165 32.86 1kzlA 208 34.00 b.43.4.3,b.43.4.3 77635,77636 2fxqA 264 34.60 1jvbA 347 34.95 b.35.1.2,c.2.1.1 77181,77182 2j8gA 339 35.53 1m15A 357 36.52 a.83.1.1,d.128.1.2 78368,78369 1vk1A 242 36.76 d.268.1.2 108634 2brjA 188 36.95 1xu1R 42 37.56 g.24.1.2 116036 1tzfA 259 37.89 c.68.1.13 107476 2vqeQ 105 38.31 1vf8A 377 38.34 c.1.8.5,d.26.3.1 120029,120030 2bemA 170 39.16 b.1.18.2 116698 1tvlA 454 39.72 c.1.16.4 107366 1i8kB 124 41.10 b.1.1.1 71131 2f69A 261 41.34 b.76.2.1,b.85.7.1 133035,133036 3co4A 312 41.96 1t17A 148 42.39 d.129.3.6 112215 1juhA 350 43.10 b.82.1.5 71884 2rdeA 251 43.77 1ey4A 149 43.93 b.40.1.1 24815 1wkrA 340 44.03 b.50.1.2 109395 1mc0A 368 45.28 d.110.2.1,d.110.2.1 78937,78938 2vgaA 207 46.07 1jznA 135 48.10 d.169.1.1 84262 1peqA 714 48.11 a.98.1.1,c.7.1.2 104131,104132 1xmtA 103 48.29 d.108.1.1 115561 4dpvZ 584 49.09 b.121.5.2 23377 1ok0A 74 49.24 b.5.1.1 93191 2fmmA 74 49.37 b.34.13.2 133782 2hk9A 275 49.70 1sk4A 163 50.31 d.118.1.1 105664 2qqrA 118 51.88 1hzoA 271 52.18 e.3.1.1 71092 1lbaA 146 52.36 d.118.1.1 41062 2hbwA 235 53.04 1sc6A 404 53.93 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1vkcA 158 54.35 d.108.1.1 113663 1fdr 248 58.60 1oh0A 131 59.18 d.17.4.3 87004 1olmA 403 59.73 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1bdfA 235 61.15 d.74.3.1,d.181.1.1 39727,42602 1wp5A 323 63.39 b.68.10.1 114780 1xcbA 211 63.70 a.4.5.38,c.2.1.12 109552,109553 2fh1A 344 64.65 d.109.1.1,d.109.1.1,d.109.1.1 133441,133442,133443 2d5wA 603 65.01 1e7uA 961 65.44 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1f46A 140 66.47 d.129.4.1 59643 1poiA 317 66.55 c.124.1.2 34153 2j6iA 364 66.58 1q7fA 286 67.25 b.68.9.1 96036 1yw1A 442 67.70 c.1.16.4 124130 1q5yA 85 70.14 d.58.18.4 95950 1yqtA 538 70.51 3cumA 302 72.05 1jy1A 464 72.62 d.136.1.3,d.136.1.3 67438,67439 1uyrA 737 73.52 c.14.1.4,c.14.1.4 100188,100189 1jihA 531 74.24 d.240.1.1,e.8.1.7 90374,90375 2dexX 671 74.68 b.2.9.1,b.6.1.6,d.126.1.5 131436,131437,131438 2eaxA 164 75.62 1ig8A 486 76.63 c.55.1.3,c.55.1.3 64746,64747 3bk5A 237 76.66 1zcjA 463 78.37 2gw4B 162 78.70 2opkA 112 79.25 2gecA 139 79.88 b.148.1.1 135059 2h8zA 359 82.37 2qmqA 286 84.27 2pjdA 343 85.20 2vn6A 151 85.26 1dm5A 315 85.85 a.65.1.1 18186 2p3rA 510 87.35 c.55.1.4,c.55.1.4 139471,139472 1cqmA 101 87.74 d.58.14.1 39321 1vavA 222 89.59 b.29.1.18 108472 2e3nA 255 89.60