# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	7.360	d.129.3.2	41321
1s96A	219	8.087	c.37.1.1	98740
2hxwA	237	8.852		
1q5yA	85	13.61	d.58.18.4	95950
1gvhA	396	14.61	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1vk1A	242	15.44	d.268.1.2	108634
2rkqA	169	15.87		
1xu1R	42	17.15	g.24.1.2	116036
1ohtA	215	18.51	d.118.1.1	87036
2an9A	207	19.03	c.37.1.1	127037
2eaxA	164	19.29		
1krhA	338	19.59	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1q3lA	69	20.23	b.34.13.2	111652
1gx5A	536	24.98	e.8.1.4	70682
2fmmA	74	26.11	b.34.13.2	133782
1pfbA	55	26.28	b.34.13.2	94655
1l5wA	796	31.00	c.87.1.4	73605
2j5aA	110	37.10		
1ju2A	536	40.20	c.3.1.2,d.16.1.1	77169,77170
1vmaA	306	41.32	a.24.13.1,c.37.1.10	108887,108888
2f3nA	76	44.92	a.60.1.2	132885
2oasA	436	47.63		
2eavA	165	50.41		
1sk4A	163	51.38	d.118.1.1	105664
1am2A	199	51.81	b.86.1.2	28381
2qqrA	118	54.21		
2gt1A	326	57.57		
1v2xA	194	58.28	c.116.1.1	100274
2c2uA	207	63.05		
1xmtA	103	67.52	d.108.1.1	115561
2oh1A	179	71.10		
1fdr	248	71.42		
2bsxA	253	71.72	c.56.2.1	129128
2g39A	497	72.56	c.124.1.2,c.124.1.2	134553,134554
1ok0A	74	72.75	b.5.1.1	93191
2opkA	112	72.79		
3bjeA	349	75.34		
2hc8A	113	76.08		
1tcvA	287	76.41		
2dyqA	144	77.97		
2f69A	261	79.35	b.76.2.1,b.85.7.1	133035,133036
1vkcA	158	82.10	d.108.1.1	113663
1xcbA	211	83.21	a.4.5.38,c.2.1.12	109552,109553
2vqeQ	105	87.90		
1sqwA	188	88.06	b.122.1.1,d.17.6.3	119033,119034
1accA	735	89.69	f.11.1.1	43828
2dgmA	466	89.84	c.67.1.6	131508