# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	9.441	d.129.3.2	41321
1s96A	219	17.38	c.37.1.1	98740
1vk1A	242	18.43	d.268.1.2	108634
2rkqA	169	19.33		
1q5yA	85	21.99	d.58.18.4	95950
2hxwA	237	23.46		
1xu1R	42	28.88	g.24.1.2	116036
1krhA	338	29.75	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1gx5A	536	30.97	e.8.1.4	70682
3bjeA	349	32.05		
1xcbA	211	32.37	a.4.5.38,c.2.1.12	109552,109553
2an9A	207	33.40	c.37.1.1	127037
1gvhA	396	33.43	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2eaxA	164	34.00		
2f3nA	76	36.61	a.60.1.2	132885
2vqeQ	105	37.11		
2bemA	170	39.35	b.1.18.2	116698
1l5wA	796	42.32	c.87.1.4	73605
2fmmA	74	45.35	b.34.13.2	133782
1ok0A	74	45.89	b.5.1.1	93191
2qqrA	118	46.50		
1vqoA	240	48.73	b.34.5.3,b.40.4.5	120361,120362
3bs2A	148	50.75		
1ohtA	215	52.45	d.118.1.1	87036
2asuB	234	52.70		
2j5aA	110	53.54		
1ju2A	536	57.63	c.3.1.2,d.16.1.1	77169,77170
2dyqA	144	57.82		
1rewC	135	63.78	g.7.1.3	97336
1vmaA	306	63.82	a.24.13.1,c.37.1.10	108887,108888
3d1cA	369	65.34		
2eavA	165	65.88		
2f69A	261	68.46	b.76.2.1,b.85.7.1	133035,133036
1twfB	1224	71.88	e.29.1.1	112726
1qfjA	232	74.19	b.43.4.2,c.25.1.1	25655,31545
2c71A	216	74.22	c.6.2.3	130017
2e3nA	255	75.61		
1v0aA	178	76.74	b.18.1.30	119815
1v2xA	194	79.25	c.116.1.1	100274
1pfbA	55	79.40	b.34.13.2	94655
1q3lA	69	79.67	b.34.13.2	111652
1sqwA	188	82.00	b.122.1.1,d.17.6.3	119033,119034
1vkcA	158	84.31	d.108.1.1	113663
1qqp2	218	86.77		
2e6xA	69	87.17