# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	7.963	d.129.3.2	41321
1gvhA	396	8.370	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2hxwA	237	11.93		
1s96A	219	12.82	c.37.1.1	98740
2f3nA	76	15.86	a.60.1.2	132885
1xu1R	42	17.17	g.24.1.2	116036
2j5aA	110	27.88		
1vkcA	158	28.37	d.108.1.1	113663
1pfbA	55	32.51	b.34.13.2	94655
2qqrA	118	35.18		
2an9A	207	36.88	c.37.1.1	127037
1q3lA	69	42.30	b.34.13.2	111652
1ok0A	74	43.61	b.5.1.1	93191
2evrA	246	44.83	b.34.11.3,d.3.1.16	132440,132441
1fcyA	236	45.73	a.123.1.1	19282
1l5wA	796	46.23	c.87.1.4	73605
2f69A	261	47.03	b.76.2.1,b.85.7.1	133035,133036
1ju2A	536	47.91	c.3.1.2,d.16.1.1	77169,77170
2ojwA	384	48.21		
1krhA	338	49.10	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
2bsxA	253	50.25	c.56.2.1	129128
3bjeA	349	53.57		
2bemA	170	55.40	b.1.18.2	116698
1vk1A	242	55.89	d.268.1.2	108634
2fmmA	74	57.70	b.34.13.2	133782
1vqoA	240	58.07	b.34.5.3,b.40.4.5	120361,120362
1am2A	199	59.80	b.86.1.2	28381
2c71A	216	60.43	c.6.2.3	130017
1a8pA	258	62.61	b.43.4.2,c.25.1.1	25654,31544
2opkA	112	65.66		
1ohtA	215	65.80	d.118.1.1	87036
1k5nB	100	66.71	b.1.1.2	77268
1uscA	178	67.08	b.45.1.2	99860
2gt1A	326	68.04		
2hc8A	113	70.16		
1n6aA	259	71.19	b.76.2.1,b.85.7.1	80121,80122
2bgiA	272	73.18		
2ozvA	260	73.62		
2eaxA	164	75.33		
2qjlA	99	75.35		
2ok8A	316	78.14		
2jm1A	141	78.67		
2psoA	237	79.46		
2vqeQ	105	79.77		
2csgA	424	82.52	b.82.2.12	130768
2dgmA	466	83.31	c.67.1.6	131508
2rkqA	169	85.03