# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1fd9A	213	1.792	d.26.1.1	59771
2f4eA	180	3.198		
2oqkA	117	3.994		
1jvwA	167	5.522	d.26.1.1	71907
1q6uA	245	6.933	d.26.1.1	95998
1wfyA	104	7.315	d.15.1.5	114597
1kzlA	208	10.22	b.43.4.3,b.43.4.3	77635,77636
1y0bA	197	10.35	c.61.1.1	122476
2awgA	118	12.61		
1yvcA	70	12.61	b.40.4.12	124094
1sawA	225	12.95	d.177.1.1	112050
1xw3A	110	15.54		
2bkdN	134	16.09		
1q6hA	224	17.16	d.26.1.1	95975
1d7qA	143	18.28	b.40.4.5	25331
1yqbA	100	18.42	d.15.1.1	123876
1bkf	107	19.58		
1r9hA	135	21.05	d.26.1.1	97260
2pfuA	99	21.67		
1wzoA	246	22.85		
2pbcA	102	24.74		
1u79A	129	24.95	d.26.1.1	107714
2cwpA	112	29.48		
1nkqA	259	30.09	d.177.1.1	103862
1bdoA	80	32.28	b.84.1.1	28214
2e5iA	124	32.46		
1bkfA	107	33.34	d.26.1.1	38382
1fl0A	171	35.01	b.40.4.4	25315
2ckkA	127	35.30		
2fhdA	153	36.05		
2z0rA	103	36.29		
1vhyA	257	36.46	b.122.1.2,c.116.1.5	100714,100715
1bdo	80	36.97		
1ahsA	126	40.93	b.19.1.1	23794
2nptA	106	42.23	d.15.2.2	138448
2a28A	54	44.68		
1wi0A	113	44.94	d.15.2.2	114657
1hyoA	421	45.46	b.34.8.1,d.177.1.1	59001,59002
2j8bA	79	46.76		
2bemA	170	47.01	b.1.18.2	116698
1at0A	145	49.28	b.86.1.1	28374
2z1cA	75	49.39		
1a34A	159	51.12	b.121.7.1	23286
2pth	193	52.40		
1s3eA	520	53.39	c.3.1.2,d.16.1.5	98426,98427
2eveA	157	54.55	b.122.1.8	132427
2e29A	92	54.87		
2ho9A	167	57.12		
1bcoA	327	58.38	b.48.1.1,c.55.3.3	26431,33676
1q46A	175	59.55	a.60.14.1,b.40.4.5	111594,111595
2g82A	331	59.96	c.2.1.3,d.81.1.1	134746,134747
1ul7A	102	60.37	d.129.6.1	99540
2pieA	138	60.92		
2drmA	58	61.68		
1h9mA	145	62.18	b.40.6.2,b.40.6.2	60833,60834
1bb9A	115	62.90	b.34.2.1	24554
2i46A	161	63.97		
2o88A	58	64.06		
2b3gA	123	64.30	b.40.4.3	127786
2ggrA	76	66.34		
2qlcA	126	67.18		
2vgiA	528	68.43		
2a19A	175	69.58		
1g31A	111	69.87	b.35.1.1	24656
2fcoA	200	70.20		
1fc6A	388	70.91	b.36.1.3,c.14.1.2	64738,64739
1z85A	234	71.06		
2z0tA	109	72.99		
1ykwA	435	74.53	c.1.14.1,d.58.9.1	123565,123566
2f8mA	244	74.83		
2hqxA	246	75.19	b.34.9.1	136675
1a0nB	69	75.21	b.34.2.1	24469
2g50A	530	75.30	b.58.1.1,c.1.12.1,c.49.1.1	134618,134619,134620
2sga	181	75.52		
1f39A	101	79.07	b.87.1.1	28386
1at0	145	80.25		
1wj6A	101	80.55	d.15.2.2	114693
1u06A	62	81.05	b.34.2.1	119404
1b8aA	438	81.86	b.40.4.1,d.104.1.1	25244,40765
2hc8A	113	82.65		
2qqrA	118	82.67		
2rdeA	251	83.57		
1gd7A	109	84.37	b.40.4.4	60441
1ddlA	188	84.40	b.121.4.6	23317
2cr5A	109	84.87	d.15.1.2	130733
1o4tA	133	85.36	b.82.1.9	86622
1bowA	159	87.11	d.60.1.1	39528
2b2yA	187	88.73	b.34.13.2,b.34.13.2	127754,127755