(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0429
    • gi|119589595|gb|EAW69189.1|_225:314 ubiquitin-like, containing PHD and RING finger domains, 1, isoform CRA_c [Homo sapiens]
    • gi|73987094|ref|XP_868462.1|_164:253 PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 isoform 4 [Canis familiaris]
    • gi|73987090|ref|XP_868453.1|_164:253 PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 isoform 2 [Canis familiaris]
    • gi|73987096|ref|XP_854422.1|_164:253 PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 isoform 1 [Canis familiaris]
    • gi|73987098|ref|XP_868468.1|_164:253 PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 isoform 5 [Canis familiaris]
    • gi|73987092|ref|XP_868458.1|_164:253 PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 isoform 3 [Canis familiaris]
    • gi|109123024|ref|XP_001082893.1|_161:252 PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 isoform 2 [Macaca mulatta]
    • gi|109123026|ref|XP_001082762.1| PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 isoform 1 [Macaca mulatta]
    • gi|109123028|ref|XP_001083019.1| PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 isoform 3 [Macaca mulatta]
    • gi|109123030|ref|XP_001083134.1| PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 isoform 4 [Macaca mulatta]
    • gi|148709750|gb|EDL41696.1|_278:369 ubiquitin-like, containing PHD and RING finger domains 2, isoform CRA_a [Mus musculus]
    • gi|124430766|ref|NP_659122.2|_185:276 ubiquitin-like, containing PHD and RING finger domains 2 [Mus musculus]
    • gi|67462063|sp|Q7TMI3|UHRF2_MOUSE E3 ubiquitin-protein ligase UHRF2 (Ubiquitin-like PHD and RING finger domain-containing protein 2) (Ubiquitin-like-containing PHD and RING finger domains protein 2) (Np95-like ring finger protein) (Nuclear zinc finger protein Np97) (NIRF) [Taxonomy]
    • gi|33589239|dbj|BAC81739.1| Np95-like ring finger protein [Mus musculus]
    • gi|37805363|gb|AAH60241.1| Ubiquitin-like, containing PHD and RING finger domains 2 [Mus musculus]
    • gi|148709751|gb|EDL41697.1| ubiquitin-like, containing PHD and RING finger domains 2, isoform CRA_b [Mus musculus]
    • gi|67461836|sp|Q7TPK1|UHRF1_RAT_157:246 E3 ubiquitin-protein ligase UHRF1 (Ubiquitin-like PHD and RING finger domain-containing protein 1) (Ubiquitin-like-containing PHD and RING finger domains protein 1) (Liver regeneration-related protein LRRG126) [Taxonomy]
    • gi|148706214|gb|EDL38161.1|_201:290 ubiquitin-like, containing PHD and RING finger domains, 1, isoform CRA_a [Mus musculus]
    • gi|73970976|ref|XP_531928.2|_185:276 PREDICTED: similar to Ubiquitin-like containing PHD and RING finger domains protein 2 (Np95-like ring finger protein) (Nuclear zinc finger protein Np97) (NIRF) isoform 1 [Canis familiaris]
    • gi|73970966|ref|XP_851749.1|_185:276 PREDICTED: similar to Ubiquitin-like containing PHD and RING finger domains protein 2 (Np95-like ring finger protein) (Nuclear zinc finger protein Np97) (NIRF) isoform 2 [Canis familiaris]
    • gi|118103345|ref|XP_418269.2|_144:233 PREDICTED: similar to ubiquitin-like, containing PHD and RING finger domains, 1 [Gallus gallus]
                      10                20          30           40    
                      |                 |           |            |    
   1 ...RKA.PSRDE....PCSS.TSR...P.ALE...ED..VIYHVKYDDYPE...NGVVQMNSRDV
   2 rvtRKA.PSRDE....PCSS.TSR...P.ALE...ED..VIYHVKYDDYPE...NGVVQMNSRDV
   3 rvtRKA.PSRDE....PCSS.TSR...P.ALE...ED..VIYHVKYDDYPE...NGVVQMNSRDV
   4 rvtRKA.PSRDE....PCSS.TSR...P.ALE...ED..VIYHVKYDDYPE...NGVVQMNSRDV
   5 rvtRKA.PSRDE....PCSS.TSR...P.ALE...ED..VIYHVKYDDYPE...NGVVQMNSRDV
   6 rvtRKA.PSRDE....PCSS.TSR...P.ALE...ED..VIYHVKYDDYPE...NGVVQMNSRDV
   7 rvtRKA.PSRDE....PCSS.TSR...P.ALE...ED..VIYHVKYDDYPE...NGVVQMNSRDV
   8 rvtRKA.PSRDE....PCSS.TSR...P.ALE...ED..VIYHVKYDDYPE...NGVVQMNSRDV
   9 rvtRKA.PSRDE....PCSS.TSR...P.ALE...ED..VIYHVKYDDYPE...NGVVQMNSRDV
  10 rvtRKA.PSQDE....PCSS.TSS...S.TPE...DD..VIYHVKYDDYPE...NGVVQMSSRDV
  11 rvtRKA.PSQDE....PCSS.TSS...S.TPE...DD..VIYHVKYDDYPE...NGVVQMSSRDV
  12 rvtRKA.PSQDE....PCSS.TSS...S.TPE...DD..VIYHVKYDDYPE...NGVVQMSSRDV
  13 rvtRKA.PSQDE....PCSS.TSS...S.TPE...DD..VIYHVKYDDYPE...NGVVQMSSRDV
  14 rvtRKA.PSQDE....PCSS.TSS...S.TPE...DD..VIYHVKYDDYPE...NGVVQMSSRDV
  15 rvtRKA.PSRDE....PCSS.TSS...P.ALE...EDadVIYHVKYDDYPE...NGVVQMNSRDV
  16 nskENT.NKLDNv...PSTS.NSD...SvAAD...ED..VIYHIEYDEYPE...SGILEMNVKDL
  17 nskENT.NKLDNv...PSTS.NSD...SvAAD...ED..VIYHIEYDEYPE...SGILEMNVKDL
  18 nskENT.NKLDNv...PSTS.NSD...SvAAD...ED..VIYHIEYDEYPE...SGILEMNVKDL
  19 nskENT.NKLDNv...PSTS.NSD...SvAAD...ED..VIYHIEYDEYPE...SGILEMNVKDL
  20 nskENT.NKLDNv...PSTS.NSD...SvAAD...ED..VIYHIEYDEYPE...SGTLEMNAKEL
  21 nskENT.NKLDNv...PSTS.NSD...SvAAD...ED..VIYHIEYDEYPE...SGTVEINVKDL
  22 kskENT.NKLDSv...PSTS.NSD...CvAAD...ED..VIYHIQYDEYPE...SGTLEMNVKDL
  23 kskENT.NKLDSv...PSTS.NSD...CvAAD...ED..VIYHIQYDEYPE...SGTLEMNVKDL
  24 kskENT.NKLDSv...PSTS.NSD...CvAAD...ED..VIYHIQYDEYPE...SGTLEMNVKDL
  25 kskENT.NKLDSv...PSTS.NSD...CvAAD...ED..VIYHIQYDEYPE...SGTLEMNVKDL
  26 kskENT.NKLDSv...PSTS.NSD...CvAAD...ED..VIYHIQYDEYPE...SGTLEMNVKDL
  27 qvqKKA.LSEEE....PCSS.SAI...M.APE...DD..IMYHIKYDDYPE...HGVDIVKAKNV
  28 qvqKKA.LSEEE....PCSS.SAI...M.APE...DD..IMYHIKYDDYPE...HGVDIVKAKNV
  29 qvqKKA.LSEEE....PCSS.SAI...M.APE...DD..IMYHIKYDDYPE...HGVDIVKAKNV
  30 qvqKRA.LSEDE....PCSS.SAV...K.TSE...DD..IMYHVKYDDYPE...HGVDIVKAKNV
  31 qvqKRA.LSEDE....PCSS.SAV...K.TSE...DD..IMYHVKYDDYPE...HGVDIVKAKNV
  32 qvqKRA.LSEDE....PCSS.SAV...K.TSE...DD..IMYHVKYDDYPE...HGVDIVKAKNV
  33 qvqKRA.LSEDE....PCSS.SAV...K.TSE...DD..IMYHVKYDDYPE...HGVDIVKAKNV
  34 qvqKRA.LSEDE....PCSS.SAV...K.TSE...DD..IMYHVKYDDYPE...HGVDIVKAKNV
  35 qvqKRA.LSEDE....PCSS.SAV...K.TSE...DD..IMYHVKYDDYPE...HGVDIVKAKNV
  36 qvqKRA.LSEDE....PCSS.SAV...K.TSE...DD..IMYHVKYDDYPE...HGVDIVKAKNV
  37 qvqKRA.LSEDE....PCSS.SAV...K.TSE...DD..IMYHVKYDDYPE...HGVDIVKAKNV
  38 qvqKRA.LSEDE....PCSS.SAV...K.TSE...DD..IMYHVKYDDYPE...HGVDIVKAKNV
  39 nskENT.KKLDNv...PSTS.NSD...SvAAD...ED..VIYHIEYDEYPE...SGTVEINVKDL
  40 ...NVT.RKERE....ASES.SDNedgQ.VAE...ED..VIYHVKYEDYPE...NGVVKLSSKDV
  41 dlnMGA.WFEAQ....IVKV.TKT...P.AEDggaED..IVYHVKYEDYPE...NGVVQLRGKDV
  42 nskENT.NKLDSv...PSTS.NSD...SvAAD...ED..VIYHIEYDEYPE...SGTVEINVKDL
  43 nskENT.NKLDSv...PSTS.NSD...SvAAD...ED..VIYHIEYDEYPE...SGTVEINVKDL
  44 hsrENT.NNLDSa...PSTS.YSD...S.MDT...EE..AIYHIKYDEYPE...NGIIEMGASNL
  45 nvsKKV.GPYGT....LPEV.SDT...S.VTS...DA..IIYHVKYEDYPE...NGVVQLTCKDV
  46 nvsKKV.GPYGT....LPEV.SDT...S.VTS...DA..IIYHVKYEDYPE...NGVVQLTCKDV
  47 nvsKKV.GPYGT....LPEV.SDT...S.VTS...DA..IIYHVKYEDYPE...NGVVQLTCKDV
  48 dlnMGA.WFEAQ....IVKV.TKT...P.AEDggaES..IVYHVKYEDYPE...NGVVQLRGKDV
  49 svtRNT.NKLDSv...PSTS.NSD...SvAAD...ED..VIYHIEYDEYPE...SGTVEINVKDL
  50 svtRNT.NKLDSv...PSTS.NSD...SvAAD...ED..VIYHIEYDEYPE...SGTVEINVKDL
  51 hsrGNT.NKLDSa...PSTS.PSN...S.MNS...ED..IIYHIEYDEYPE...NGIIEMRSKNL
  52 hsrGNT.NKLDSa...PSTS.PSN...S.MNS...ED..IIYHIEYDEYPE...NGIIEMRSKNL
  53 rvtRKA.PAHDQ....PSSS.SSK...P.--E...DD..IIYHVTYDDYPE...NGVVQMTSQNV
  54 vtrRKA.ANESC....AVAD.QQT...T.IPE...ED..VIYHVKYEDYPE...NGVVELSSNDV
  55 dlnMGA.WFEAQ....IVKV.TKT...P.AEDggpEE..IVYHVKYEDYPE...NGVVQLRGKDV
  56 ...AQI.VNVTKtpktPEEG.AGE...G.RAE...EE..ILYHVKFEDYPE...NGVIQLLGKDV
  57 r..ENS.HAVDTn...PSTSyNDI...L.DED...EN..VIYHIKYDDYPE...NGLVEMDLSNL
  58 dvgLGA.WFEAR....IRSV.TRA...SdGHS...RD..VIYHIEYDEYPE...SGTVEINVKDL
  59 dvgLGA.WFEAR....IRSV.TRA...SdGHS...RD..VIYHIEYDEYPE...SGTVEINVKDL
  60 hsrENV.VDTNP....STSY.NDI...L.DDN...EN..VIYHIKYDDYPE...NGLVEMDLSNL
  61 es.NGAsTSRTD....STAA.AET...K.ERE...ED..AVYHIKYEDYPE...NGVVAMKPVDV
  62 qvqKRA.LSEDE....PCSS.SAV...K.TSE...DD..IMYHV---NYPE...HGVDIVKAKNV
  63 qtsTNT.HTHTD....SSTA.ADR...L.TTDsstDR..VSYHIRYEDYPE...NGVVEMSVSDV
  64 dpsMGA.WFEAE....IVDI.SLK...D.ESDp..ES..VLYHVKYDGYEE...DEINKLPGRDI
  65 lkeGGS.GVIQI....AGKH.DSH...W.TRH...DG..LIYHVKYEGYDE...EGIAKISSRSI
  66 aqdTDV.GAWFE....AKVV.NVT...K.GKT...DG..LDYHIKFDDYGD...DGVKVVGEKLI
  67 dctDNA.LGAWF....EAVI.VKI...F.TKS...EK..LFYKVRWD-LPEtknDEPFNIEEKFI
  68 ...---.-----....----.---...-.---...--..------------...-----MNVKDL
  69 ...---.-----....----.---...-.---...--..------------...-----MNVKDL
  70 wfeAKI.LGIFK....PKET.EN-...-.ADE...KD..LTFRIKMDRNGN...TAAFDVTFSEI


          50        60        70        80          90   
          |         |         |         |           |   
   1 RARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETR...
   2 RARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETRtar
   3 RARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETRtar
   4 RARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETRtar
   5 RARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETRtar
   6 RARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETRtar
   7 RARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETRtar
   8 RARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETRtar
   9 RARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETRtar
  10 RARARNILKWQELEVGQVVMLNYNPDNPKERGFWYDAEI..LRKRETRtar
  11 RARARNILKWQELEVGQVVMLNYNPDNPKERGFWYDAEI..LRKRETRtar
  12 RARARNILKWQELEVGQVVMLNYNPDNPKERGFWYDAEI..LRKRETRtar
  13 RARARNILKWQELEVGQVVMLNYNPDNPKERGFWYDAEI..LRKRETRtar
  14 RARARNILKWQELEVGQVVMLNYNPDNPKERGFWYDAEI..LRKRETRtar
  15 RARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEI..SRKRETRtar
  16 RPRARTILKWNELNVGDVVMVNYNVENPGKRGFWYDAEI..TTLKTISrtk
  17 RPRARTILKWNELNVGDVVMVNYNVENPGKRGFWYDAEI..TTLKTISrtk
  18 RPRARTILKWNELNVGDVVMVNYNVENPGKRGFWYDAEI..TTLKTISrtk
  19 RPRARTILKWNELNVGDVVMVNYNVENPGKRGFWYDAEI..TTLKSISrsk
  20 RPRARTILKWNELNVGDVVMVNYNVENPGKRGFWYDAEI..TTLKTISrtk
  21 RPRARTTLKWNELNVGDVVMVNYNVENPGNRGFWFDAEI..TALKTISrtk
  22 RPRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEI..TTLKTISrtk
  23 RPRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEI..TTLKTISrtk
  24 RPRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEI..TTLKTISrtk
  25 RPRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEI..TTLKTISrtk
  26 RPRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEI..TTLKTISrtk
  27 RARARTVIPWEDLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  28 RARARTVIPWEDLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  29 RARARTVIPWEDLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  30 RARARTVIPWENLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  31 RARARTVIPWENLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  32 RARARTVIPWENLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  33 RARARTVIPWENLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  34 RARARTVIPWENLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  35 RARARTVIPWENLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  36 RARARTVIPWENLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  37 RARARTVIPWENLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  38 RARARTVIPWENLKVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  39 RPRARTTLRWNELNVGDVVMVNYNVESPSNRGFWFDAEI..TTLKTISrtk
  40 RARARTILKWHQLEVGQIVMVNYNPDEPKERGFWYDAEI..LRKRETRtvk
  41 RPRARTVYQWHQLEPGMIVMVNYNPDDPKERGYWYDAEI..QRKRETRtqr
  42 RPRARTNLKWNELNVGDVVMVNYSVENPGNRGFWFDAEI..TALKTISrtk
  43 RPRARTNLKWNELNVGDVVMVNYSVENPGNRGFWFDAEI..TALKTISrtk
  44 RPRARTILKWNELNVGDVVMVNYNVETPEERGFWFDAEI..TTLREISrtn
  45 RLRARTTLPWHEIKVGQVVMVNYNPDEPKERGYWYDAEI..LRKHESKkik
  46 RLRARTTLPWHEIKVGQVVMVNYNPDEPKERGYWYDAEI..LRKHESKkik
  47 RLRARTTLPWHEIKVGQVVMVNYNPDEPKERGYWYDAEI..LRKHESKkik
  48 RPRARTVYQWHQLEPGMIVMVNYNPDDPKERGYWYDAEI..QRKRETRtqr
  49 RPRARTNLKWNELNVGDVVMVNYSVENPGNRGFWFDAEI..TALKTISrtk
  50 RPRARTNLKWNELNVGDVVMVNYSVENPGNRGFWFDAEI..TALKTISrtk
  51 RPRARKTLKWNELKVGDLVMVNYNVDTPEERGFWYDAEI..TTLKEISrtn
  52 RPRARKTLKWNELKVGDLVMVNYNVDTPEERGFWYDAEI..TTLKEISrtn
  53 RARARHTIKWEDLQVGQVVMVNYNPDLPKDRGFWYDAEI..LRKRETRtar
  54 RSRARTILKWHQLEVGQVVMVNYNPDEPTERGFWYDAEI..LQKRETKlir
  55 RPRARTVYQWRQLEPGMIVMVNYNPDDPKERGYWYDAEI..QRKRETRtqr
  56 RPRARTVYQWHQLEAGMIVMVNYNPDDPKERGYWYDAEI..QRKRETRtlr
  57 RPRARTLLKWSDLKTGDKVMVNYNVETPEERGFWFDAEI..TELKEMSrtn
  58 RPRARTNLKWNELNVGDVVMVNYSVENPGNRGFWFDAEI..TALKTISrtk
  59 RPRARTNLKWNELNVGDVVMVNYSVENPGNRGFWFDAEI..TALKTISrtk
  60 RPRARTLLKWSDLKIGDKVMVNYNVETPEERGFWFDAEI..TNLKEMSrtn
  61 RPRARTLLRWDQLQVGMRVMVNYNLETPEERGFWFDAEV..QTVNQTSrts
  62 RARARTVIPWENLEVGQVVMANYNVDYPRKRGFWYDVEI..CRKRQTRtar
  63 RPRARTLLRFDQLSVGDVVMVNHNLELPEERGFWYDAEI..TALNAVSrtn
  64 RPRARKRLQWDQLSVGQVVMANYCPDEPKERGFWYDVQI..TKKHSKQitq
  65 RPRARTMIDYEDVNVGDIVMVNYNCDEPKQRGYWYDMVV..KNKKETRsyk
  66 RPRARKLLEWNEIEVTSKVMANYNMDHPKERGFWYDCVV..LDKKNKRkkn
  67 RPRAWKVLNFNDLDIGQKVMVNYNLEDPKEIGNWYDFTI..SKIKNTKsak
  68 RPRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEI..TTLKTISrtk
  69 RPRARTILKWNELNVGDVVMVNYNVESPGQRGFWFDAEI..TTLKTISrtk
  70 RPRAYYTYHKSELTPGVIVLANYNIEEPTSRGYWYDFEIkeITKKGIKgal