# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1r7aA	504	3.860	b.71.1.1,c.1.8.1	97192,97193
1em2A	229	4.693	d.129.3.2	41321
2h8gA	267	12.67		
1mhnA	59	14.21	b.34.9.1	84964
1gvhA	396	14.66	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1edgA	380	15.30	c.1.8.3	28807
1xu1R	42	15.34	g.24.1.2	116036
2arcA	164	16.63	b.82.4.1	28148
2qqrA	118	20.45		
1vqoA	240	20.73	b.34.5.3,b.40.4.5	120361,120362
1vqoK	132	21.73	b.39.1.1	120372
1louA	101	22.58	d.58.14.1	39323
1avqA	228	22.80	c.52.1.13	33326
1ok0A	74	23.15	b.5.1.1	93191
1wznA	252	24.14	c.66.1.43	121525
1hoe	74	24.20		
1qstA	160	25.33	d.108.1.1	40804
2gduA	504	25.50	b.71.1.1,c.1.8.1	135032,135033
1pdqA	72	31.46	b.34.13.2	94590
1yadA	221	35.59		
1ohtA	215	40.58	d.118.1.1	87036
1pfbA	55	42.84	b.34.13.2	94655
2f2lX	167	45.11	d.118.1.1	132844
1b8oA	284	45.72	c.56.2.1	33762
1cqmA	101	49.68	d.58.14.1	39321
2raaA	204	50.09		
1a8pA	258	50.63	b.43.4.2,c.25.1.1	25654,31544
2qdxA	257	51.50		
1vqoE	178	51.53	d.141.1.1,d.141.1.1	120366,120367
3b34A	891	51.61		
1lcyA	325	54.43	b.36.1.4,b.47.1.1	73834,73835
2fmmA	74	54.47	b.34.13.2	133782
2rkqA	169	54.72		
1ou8A	111	55.24	b.136.1.1	93543
2aqpA	164	60.18		
2qg7A	458	61.47		
1fdr	248	64.85		
2ekdA	207	64.95		
1z9nA	177	67.55		
1kmkA	406	69.39	c.67.1.3	68696
2hd9A	145	70.35		
2ee1A	64	70.59		
1tib	269	72.06		
1yaiA	151	72.21	b.1.8.1	22289
1wmmA	145	73.71	b.122.1.8	121049
1gd1O	334	74.48	c.2.1.3,d.81.1.1	29962,39877
2b2yA	187	76.25	b.34.13.2,b.34.13.2	127754,127755
1jj2E	177	76.51	d.141.1.1,d.141.1.1	63089,63090
1tqjA	230	77.04	c.1.2.2	107228
1yfnA	118	78.13	b.136.1.1	123080
1xcbA	211	79.84	a.4.5.38,c.2.1.12	109552,109553
1wl8A	189	82.11	c.23.16.1	120997
2hc8A	113	83.94		
2f2lA	167	86.40	d.118.1.1	132843
1am2A	199	86.48	b.86.1.2	28381
1zc1A	208	86.59		
1sxrA	183	87.28	d.118.1.1	106101
2aqqA	164	87.50