# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	1.570	d.129.3.2	41321
1r7aA	504	8.914	b.71.1.1,c.1.8.1	97192,97193
1avqA	228	12.77	c.52.1.13	33326
2h8gA	267	16.07		
2f2lX	167	19.51	d.118.1.1	132844
1ohtA	215	19.91	d.118.1.1	87036
1gvhA	396	21.91	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1xu1R	42	24.39	g.24.1.2	116036
2ouxA	286	24.63		
1louA	101	27.05	d.58.14.1	39323
3chvA	284	29.58		
1pdqA	72	30.13	b.34.13.2	94590
1ok0A	74	31.06	b.5.1.1	93191
2yvyA	278	31.63		
1hoe	74	31.75		
1pfbA	55	35.66	b.34.13.2	94655
1b8oA	284	38.24	c.56.2.1	33762
2rkqA	169	39.22		
2aqpA	164	42.30		
1vqoK	132	42.47	b.39.1.1	120372
1sxrA	183	42.91	d.118.1.1	106101
1cqmA	101	45.21	d.58.14.1	39321
2vqeQ	105	47.18		
2r55A	231	48.94		
3bh0A	315	49.93		
1vqoA	240	51.73	b.34.5.3,b.40.4.5	120361,120362
1mhnA	59	52.05	b.34.9.1	84964
1z9nA	177	52.19		
1edgA	380	57.34	c.1.8.3	28807
2arcA	164	60.79	b.82.4.1	28148
1ou8A	111	63.26	b.136.1.1	93543
2e3nA	255	67.26		
2opkA	112	68.47		
1vqoE	178	70.88	d.141.1.1,d.141.1.1	120366,120367
2qqrA	118	70.94		
1x3qA	57	73.86	b.34.13.2	121669
1lba	146	76.61		
2hftA	218	77.74	b.1.2.1,b.1.2.1	21951,21952
1yfnA	118	79.35	b.136.1.1	123080
2aqqA	164	79.53		
2psoA	237	81.74		
1kmkA	406	83.11	c.67.1.3	68696
1frpA	335	83.16	e.7.1.1	42875
2a8yA	270	85.95		
3besR	250	86.70		
2gduA	504	89.89	b.71.1.1,c.1.8.1	135032,135033