# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	2.160	d.129.3.2	41321
1r7aA	504	7.037	b.71.1.1,c.1.8.1	97192,97193
1gvhA	396	7.264	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1ohtA	215	11.48	d.118.1.1	87036
1avqA	228	13.28	c.52.1.13	33326
2f2lX	167	14.38	d.118.1.1	132844
2h8gA	267	15.22		
1pfbA	55	15.27	b.34.13.2	94655
1xu1R	42	16.49	g.24.1.2	116036
1pdqA	72	17.89	b.34.13.2	94590
1qstA	160	19.23	d.108.1.1	40804
2ouxA	286	27.89		
1sxrA	183	28.20	d.118.1.1	106101
1louA	101	28.28	d.58.14.1	39323
1q3lA	69	28.64	b.34.13.2	111652
3chvA	284	29.24		
1b8oA	284	33.90	c.56.2.1	33762
1mhnA	59	34.87	b.34.9.1	84964
1vk1A	242	40.97	d.268.1.2	108634
2rkqA	169	41.88		
1fdr	248	42.01		
1ou8A	111	42.07	b.136.1.1	93543
1vqoK	132	46.55	b.39.1.1	120372
1lcyA	325	49.51	b.36.1.4,b.47.1.1	73834,73835
1vqoE	178	49.76	d.141.1.1,d.141.1.1	120366,120367
1hoe	74	50.66		
3bh0A	315	50.73		
2yvyA	278	50.91		
2r55A	231	51.16		
3besR	250	52.07		
2opkA	112	52.55		
1ok0A	74	54.36	b.5.1.1	93191
2arcA	164	56.01	b.82.4.1	28148
1yfnA	118	56.15	b.136.1.1	123080
1wznA	252	57.23	c.66.1.43	121525
2vqeQ	105	58.93		
2f2lA	167	59.38	d.118.1.1	132843
2qdxA	257	59.82		
1zjrA	211	60.49		
1fjgQ	105	63.34	b.40.4.5	25352
2qqrA	118	64.10		
1cqmA	101	64.95	d.58.14.1	39321
1sk4A	163	66.75	d.118.1.1	105664
2fmmA	74	66.93	b.34.13.2	133782
2gfgA	193	67.27		
1x3qA	57	70.62	b.34.13.2	121669
2psoA	237	71.16		
2gecA	139	71.47	b.148.1.1	135059
1w7cA	747	72.29		
2b2yA	187	73.70	b.34.13.2,b.34.13.2	127754,127755
1dl2A	511	76.21	a.102.2.1	18844
2dt5A	211	77.02	a.4.5.38,c.2.1.12	131708,131709
1a8pA	258	78.53	b.43.4.2,c.25.1.1	25654,31544
2pzmA	330	78.85		
2ee1A	64	78.94		
1xcbA	211	78.97	a.4.5.38,c.2.1.12	109552,109553
1xr4A	509	79.28	c.124.1.2,c.124.1.2	115860,115861
2dy8A	69	85.08	b.34.13.2	131892
1yadA	221	86.38		
2hd9A	145	89.94