# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	1.998	d.129.3.2	41321
1r7aA	504	6.061	b.71.1.1,c.1.8.1	97192,97193
1avqA	228	14.97	c.52.1.13	33326
2f2lX	167	16.66	d.118.1.1	132844
1ohtA	215	17.09	d.118.1.1	87036
2h8gA	267	17.58		
1xu1R	42	25.45	g.24.1.2	116036
1gvhA	396	27.33	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2vqeQ	105	30.15		
2arcA	164	32.74	b.82.4.1	28148
1louA	101	32.84	d.58.14.1	39323
1ok0A	74	33.25	b.5.1.1	93191
2rkqA	169	33.75		
1vqoA	240	34.07	b.34.5.3,b.40.4.5	120361,120362
1hoe	74	34.41		
3chvA	284	35.02		
1edgA	380	35.38	c.1.8.3	28807
1sxrA	183	39.45	d.118.1.1	106101
2e3nA	255	40.61		
2aqpA	164	40.82		
1xcbA	211	41.80	a.4.5.38,c.2.1.12	109552,109553
1mhnA	59	43.51	b.34.9.1	84964
2ouxA	286	45.43		
1z9nA	177	47.11		
1vqoK	132	49.08	b.39.1.1	120372
1vqoE	178	55.34	d.141.1.1,d.141.1.1	120366,120367
3besR	250	56.29		
3bh0A	315	60.02		
2r55A	231	65.56		
1cqmA	101	68.34	d.58.14.1	39321
2yvyA	278	71.66		
1frpA	335	71.96	e.7.1.1	42875
2dt5A	211	72.08	a.4.5.38,c.2.1.12	131708,131709
1vk1A	242	72.65	d.268.1.2	108634
1b8oA	284	73.10	c.56.2.1	33762
1ypxA	375	75.99		
1pfbA	55	78.19	b.34.13.2	94655
1lba	146	78.94		
2aqqA	164	79.41		
2gduA	504	79.48	b.71.1.1,c.1.8.1	135032,135033
2qqrA	118	81.62		
1yadA	221	84.28		
2cr4A	126	85.62		
1pdqA	72	86.21	b.34.13.2	94590
1accA	735	88.43	f.11.1.1	43828
1esoA	154	89.01	b.1.8.1	22293
1a8pA	258	89.83	b.43.4.2,c.25.1.1	25654,31544