# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	2.019	d.129.3.2	41321
1r7aA	504	4.702	b.71.1.1,c.1.8.1	97192,97193
1avqA	228	8.052	c.52.1.13	33326
2h8gA	267	17.69		
1edgA	380	19.90	c.1.8.3	28807
3chvA	284	21.01		
1xu1R	42	21.54	g.24.1.2	116036
1xr4A	509	25.12	c.124.1.2,c.124.1.2	115860,115861
1mhnA	59	27.80	b.34.9.1	84964
1pdqA	72	28.27	b.34.13.2	94590
1gvhA	396	30.22	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1vqoK	132	30.24	b.39.1.1	120372
1pfbA	55	31.35	b.34.13.2	94655
2arcA	164	32.42	b.82.4.1	28148
1vk1A	242	33.39	d.268.1.2	108634
1louA	101	34.72	d.58.14.1	39323
3bh0A	315	36.52		
2psoA	237	42.73		
2f2lX	167	44.36	d.118.1.1	132844
2aqpA	164	46.18		
1b8oA	284	47.12	c.56.2.1	33762
2hftA	218	49.89	b.1.2.1,b.1.2.1	21951,21952
2ouxA	286	50.72		
1ok0A	74	52.18	b.5.1.1	93191
2opkA	112	53.26		
1ohtA	215	53.61	d.118.1.1	87036
1hoe	74	58.66		
1w7cA	747	60.43		
1lcyA	325	61.73	b.36.1.4,b.47.1.1	73834,73835
1zc1A	208	64.13		
2a8yA	270	64.19		
1qstA	160	65.49	d.108.1.1	40804
1a8pA	258	65.54	b.43.4.2,c.25.1.1	25654,31544
2yvyA	278	66.46		
1cqmA	101	66.58	d.58.14.1	39321
1vqoA	240	67.13	b.34.5.3,b.40.4.5	120361,120362
2b2yA	187	69.30	b.34.13.2,b.34.13.2	127754,127755
1z9nA	177	70.44		
2gduA	504	71.49	b.71.1.1,c.1.8.1	135032,135033
1accA	735	73.50	f.11.1.1	43828
2bsxA	253	73.61	c.56.2.1	129128
2qdxA	257	73.72		
2vqeQ	105	75.04		
1danU	121	76.28	b.1.2.1	21954
2r55A	231	79.48		
2qqrA	118	80.53		
1yadA	221	82.15		
1ypxA	375	83.20		
1xcbA	211	84.25	a.4.5.38,c.2.1.12	109552,109553
1dl2A	511	85.30	a.102.2.1	18844
2ee1A	64	87.36		
3besR	250	88.95		
2gecA	139	89.57	b.148.1.1	135059