# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ohtA	215	20.12	d.118.1.1	87036
1r7aA	504	21.14	b.71.1.1,c.1.8.1	97192,97193
1louA	101	25.26	d.58.14.1	39323
3bh0A	315	25.80		
2yvyA	278	26.73		
1ok0A	74	27.86	b.5.1.1	93191
2ouxA	286	30.71		
1hoe	74	30.85		
1edgA	380	43.15	c.1.8.3	28807
1kshA	186	52.14	c.37.1.8	72914
2rkqA	169	55.05		
1pfbA	55	67.08	b.34.13.2	94655
1wmmA	145	68.41	b.122.1.8	121049
2f2lX	167	70.05	d.118.1.1	132844
1fjgQ	105	71.56	b.40.4.5	25352
1uptA	171	71.59	c.37.1.8	99767
1zjrA	211	72.26		
2fmmA	74	84.28	b.34.13.2	133782
2bkdN	134	86.37		
1b8oA	284	89.06	c.56.2.1	33762