This file specifies which residues will be varied Column 2: Chain Column 4-7: sequential residue number Column 9-12: pdb residue number Column 14-18: id (described below) Column 21-40: amino acids to be used NATAA => use native amino acid ALLAA => all amino acids NATRO => native amino acid and rotamer PIKAA => select inividual amino acids POLAR => polar amino acids APOLA => apolar amino acids The following demo lines are in the proper format A 1 3 NATAA A 2 4 ALLAA A 3 6 NATRO A 4 7 NATAA B 5 1 PIKAA DFLM B 6 2 PIKAA HIL B 7 3 POLAR ------------------------------------------------- start A 1 54 NATAA R A 2 55 NATAA K A 3 56 NATAA A A 4 57 NATRO P A 5 58 NATAA S A 6 59 NATAA R A 7 60 NATAA D A 8 61 NATAA E A 9 62 NATRO P A 10 63 NATRO C A 11 64 NATAA S A 12 65 NATAA S A 13 66 NATAA T A 14 67 NATAA S A 15 68 NATAA R A 16 69 NATRO P A 17 70 NATAA A A 18 71 NATAA L A 19 72 NATAA E A 20 73 NATAA E A 21 74 NATAA D A 22 75 NATAA V A 23 76 NATAA I A 24 77 NATAA Y A 25 78 NATAA H A 26 79 NATAA V A 27 80 NATAA K A 28 81 NATAA Y A 29 82 NATAA D A 30 83 NATAA D A 31 84 NATAA Y A 32 85 NATRO P A 33 86 NATAA E A 34 87 NATAA N A 35 88 NATAA G A 36 89 NATAA V A 37 90 NATAA V A 38 91 NATAA Q A 39 92 NATAA M A 40 93 NATAA N A 41 94 NATAA S A 42 95 NATAA R A 43 96 NATAA D A 44 97 NATAA V A 45 98 NATAA R A 46 99 NATAA A A 47 100 NATAA R A 48 101 NATAA A A 49 102 NATAA R A 50 103 NATAA T A 51 104 NATAA I A 52 105 NATAA I A 53 106 NATAA K A 54 107 NATAA W A 55 108 NATAA Q A 56 109 NATAA D A 57 110 NATAA L A 58 111 NATAA E A 59 112 NATAA V A 60 113 NATAA G A 61 114 NATAA Q A 62 115 NATAA V A 63 116 NATAA V A 64 117 NATAA M A 65 118 NATAA L A 66 119 NATAA N A 67 120 NATAA Y A 68 121 NATAA N A 69 122 NATRO P A 70 123 NATAA D A 71 124 NATAA N A 72 125 NATRO P A 73 126 NATAA K A 74 127 NATAA E A 75 128 NATAA R A 76 129 NATAA G A 77 130 NATAA F A 78 131 NATAA W A 79 132 NATAA Y A 80 133 NATAA D A 81 134 NATAA A A 82 135 NATAA E A 83 136 NATAA I A 84 137 NATAA S A 85 138 NATAA R A 86 139 NATAA K A 87 140 NATAA R A 88 141 NATAA E A 89 142 NATAA T A 90 143 NATAA R