# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.05714 b.34.9.1 84964 1g5vA 88 0.09097 b.34.9.1 60292 1wgsA 133 0.1191 b.34.13.3 114622 1vqoK 132 0.1781 b.39.1.1 120372 2gfaA 119 0.1916 b.34.9.1,b.34.9.1 135089,135090 2eqkA 85 0.3806 1zc1A 208 0.7674 1rkiA 102 1.846 d.308.1.2 118776 2hqxA 246 2.095 b.34.9.1 136675 2qqrA 118 2.108 1ssfA 156 3.578 b.34.9.1,b.34.9.1 105982,105983 1zoyB 252 3.935 1xniA 118 4.294 b.34.9.1,b.34.9.1 115582,115583 1jfxA 217 4.635 c.1.8.8 62943 1v6zA 228 4.642 b.122.1.2,c.116.1.5 113551,113552 1f5fA 205 5.340 b.29.1.4 24222 1vhyA 257 5.460 b.122.1.2,c.116.1.5 100714,100715 1ecxA 384 5.511 c.67.1.3 34431 2bjrA 368 5.707 b.169.1.1,b.169.1.1 128628,128629 1x89A 178 5.801 b.60.1.1 121799 1k12A 158 6.124 b.18.1.15 71978 1pz7A 204 6.512 b.29.1.4 95405 2f5kA 102 6.891 b.34.13.3 132995 2bjqA 345 7.764 b.169.1.1,b.169.1.1 128626,128627 2cszA 76 8.023 1h30A 422 8.343 b.29.1.4,b.29.1.4 76604,76605 2ebeA 106 8.407 1epaA 164 8.573 b.60.1.1 27128 1sk4A 163 8.872 d.118.1.1 105664 1c4rA 182 10.53 b.29.1.4 24229 2ofzA 138 10.95 2btlA 134 12.53 b.148.1.1 129154 2a90A 240 12.79 2ffwA 78 13.59 1fd9A 213 14.15 d.26.1.1 59771 2cwzA 141 14.19 d.38.1.7 130961 1kbvA 327 14.95 b.6.1.3,b.6.1.3 68395,68396 1n7oA 721 15.65 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1krnA 88 15.86 g.14.1.1 44629 2dyuA 334 17.64 2h88B 252 18.08 1qy1A 174 18.80 b.60.1.1 96568 1zkcA 197 19.06 b.62.1.1 125182 1z85A 234 19.22 1zldA 120 20.34 1p3wA 404 20.51 c.67.1.3 87752 2yueA 168 20.55 2yyoA 171 20.66 1x1iA 752 20.92 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1x24A 180 21.93 1lba 146 22.41 1eg5A 384 22.78 c.67.1.3 34429 1mwmA 320 22.81 c.55.1.1,c.55.1.1 79580,79581 1gkfB 557 25.62 2g3rA 123 27.18 b.34.9.1,b.34.9.1 134570,134571 1gk9B 557 27.97 1i71A 83 28.31 g.14.1.1 61864 1i06A 180 28.50 b.60.1.1 27131 1g8kA 825 28.70 b.52.2.2,c.81.1.1 26920,35328 1ajqB 557 28.72 1ao0A 459 28.87 c.61.1.1,d.153.1.1 34049,41816 1kdkA 177 29.15 b.29.1.4 72351 1t50A 58 29.38 g.63.1.1 99124 2egvA 229 30.54 1v8hA 107 30.79 b.1.18.19 119870 2j5aA 110 31.40 1qqsA 174 32.53 b.60.1.1 27143 1qtnB 95 33.23 1at0 145 33.68 1lf7A 182 34.99 b.60.1.1 73878 1r7aA 504 37.27 b.71.1.1,c.1.8.1 97192,97193 2aynA 404 37.64 d.3.1.9 127563 1j0hA 588 38.20 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1e3aB 560 38.29 2ps1A 226 39.87 1y3tA 337 40.08 b.82.1.5 122600 3b3qE 197 40.15 1at0A 145 40.85 b.86.1.1 28374 1yewA 382 42.18 1nxzA 246 42.45 b.122.1.2,c.116.1.5 86391,86392 1bkcI 256 43.24 d.92.1.10 40334 2i2lA 142 43.37 2nujA 163 43.97 d.38.1.1 138608 2g84A 197 44.01 c.97.1.2 134766 1gm6A 175 44.67 b.60.1.1 70272 1zndA 174 45.06 b.60.1.1 125380 2ra6A 166 45.29 1j1nA 492 45.89 c.94.1.1 83978 2cztA 167 46.88 1xo7A 166 47.36 b.62.1.1 115694 2i9xA 87 49.82 1ew3A 159 52.77 b.60.1.1 27114 2fjlA 150 52.87 b.55.1.1 133611 1noyA 388 53.40 c.55.3.5 33713 1f20A 435 54.59 b.43.4.1,c.25.1.4 64932,64933 1pmlA 86 57.90 g.14.1.1 44632 2fbwB 252 58.53 2aeeA 211 59.02 c.61.1.1 126620 2fiwA 172 60.59 d.108.1.1 133539 1kt6A 183 61.01 b.60.1.1 84466 1gpl 432 61.99 2dbjA 124 62.24 2b71A 196 62.59 b.62.1.1 128004 1egiA 147 63.47 d.169.1.1 42331 2qjlA 99 66.18 1nmeB 92 66.48 1g8lA 411 66.95 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1b96A 244 68.18 c.52.1.2 33268 1cdcA 99 69.56 b.1.1.1 19746 1vjvA 415 69.73 d.3.1.9 108632 1gwyA 175 69.75 b.97.1.1 83356 1iazA 179 70.29 b.97.1.1 62131 2hzmA 212 70.80 1ris 101 71.30 2psoA 237 71.82 1cfb 205 73.68 1louA 101 75.43 d.58.14.1 39323 2p3yA 491 75.52 2gar 212 75.54 3c5iA 369 75.99 1qoiA 177 76.05 b.62.1.1 27490 1n13B 113 76.15 1kv7A 488 76.84 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1fggA 261 77.38 c.68.1.7 34576 1g6xA 58 77.39 g.8.1.1 60320 2hc8A 113 79.80 2f4wA 187 79.94 d.20.1.1 132958 1wi5A 119 79.95 b.40.4.5 114661 1whiA 122 80.15 b.39.1.1 24810 2cjaA 522 81.01 1wmvA 54 81.33 1b94A 244 81.77 c.52.1.2 33250 1gtdA 85 83.01 d.284.1.1 76344 1nglA 179 84.21 b.60.1.1 27146 1yoaA 159 84.55 b.45.1.2 123775 1i8dA 213 86.51 b.43.4.3,b.43.4.3 61953,61954 1kn3A 183 88.94 b.17.1.1 72764 1whi 122 89.25 2gouA 365 89.28 1b2zA 110 89.28 d.1.1.2 36216