# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.02151 b.34.9.1 84964 1g5vA 88 0.03322 b.34.9.1 60292 1vqoK 132 0.06237 b.39.1.1 120372 2gfaA 119 0.0999 b.34.9.1,b.34.9.1 135089,135090 1wgsA 133 0.1348 b.34.13.3 114622 2eqkA 85 0.3069 1c4rA 182 0.6336 b.29.1.4 24229 2bjqA 345 0.7488 b.169.1.1,b.169.1.1 128626,128627 1x1iA 752 0.8611 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1zc1A 208 1.564 2qqrA 118 1.603 1n7oA 721 1.667 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1qtnB 95 1.723 2bjrA 368 1.791 b.169.1.1,b.169.1.1 128628,128629 1sk4A 163 1.921 d.118.1.1 105664 1mwmA 320 2.120 c.55.1.1,c.55.1.1 79580,79581 2i9xA 87 2.338 2hqxA 246 2.788 b.34.9.1 136675 1pz7A 204 2.998 b.29.1.4 95405 1h30A 422 3.414 b.29.1.4,b.29.1.4 76604,76605 1kbvA 327 4.060 b.6.1.3,b.6.1.3 68395,68396 1nmeB 92 4.069 1xniA 118 4.069 b.34.9.1,b.34.9.1 115582,115583 1r7aA 504 4.491 b.71.1.1,c.1.8.1 97192,97193 1rkiA 102 4.570 d.308.1.2 118776 1f5fA 205 5.161 b.29.1.4 24222 3b3qE 197 5.664 1ssfA 156 5.840 b.34.9.1,b.34.9.1 105982,105983 2cszA 76 6.409 1z85A 234 6.801 1vhyA 257 6.851 b.122.1.2,c.116.1.5 100714,100715 2f5kA 102 7.021 b.34.13.3 132995 1pyoB 105 8.125 1fd9A 213 8.236 d.26.1.1 59771 2a90A 240 8.556 1jfxA 217 8.740 c.1.8.8 62943 1kdkA 177 9.196 b.29.1.4 72351 1v8hA 107 9.303 b.1.18.19 119870 1v6zA 228 9.866 b.122.1.2,c.116.1.5 113551,113552 2ofzA 138 10.23 2ffwA 78 10.55 1bag 425 11.17 1jdpA 441 11.30 c.93.1.1 62906 1uasA 362 11.69 b.71.1.1,c.1.8.1 88388,88389 1fggA 261 13.56 c.68.1.7 34576 1at0 145 13.92 2ps1A 226 14.08 1pmlA 86 15.32 g.14.1.1 44632 1x89A 178 15.50 b.60.1.1 121799 1g8kA 825 15.66 b.52.2.2,c.81.1.1 26920,35328 1sr9A 644 15.92 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1x24A 180 15.93 2j5aA 110 16.05 1zoyB 252 16.38 1t50A 58 16.51 g.63.1.1 99124 3bodA 178 16.66 2g3rA 123 17.16 b.34.9.1,b.34.9.1 134570,134571 1djqA 729 17.44 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 2dbjA 124 17.72 1b94A 244 18.10 c.52.1.2 33250 1b97A 244 18.28 c.52.1.2 33252 2nujA 163 18.72 d.38.1.1 138608 2egvA 229 19.02 1lba 146 19.23 2jg1A 330 19.45 2dkoB 103 19.90 2dyuA 334 20.60 7taa 478 20.99 2h8zA 359 21.93 1j9qA 341 22.69 b.6.1.3,b.6.1.3 62765,62766 1n7zA 334 23.70 b.127.1.1 85380 2f02A 323 23.81 c.72.1.1 132649 1wi5A 119 24.10 b.40.4.5 114661 1oe1A 336 25.29 b.6.1.3,b.6.1.3 86891,86892 2vhhA 405 26.06 1gpl 432 26.13 2yueA 168 26.36 2ebeA 106 26.37 1ecxA 384 26.49 c.67.1.3 34431 1at0A 145 27.23 b.86.1.1 28374 2cwpA 112 27.30 2btlA 134 27.68 b.148.1.1 129154 1b96A 244 27.83 c.52.1.2 33268 2opkA 112 28.25 2aacA 177 28.29 b.82.4.1 28150 1nif 340 29.67 1oycA 400 29.83 c.1.4.1 28603 2b1yA 104 31.11 b.156.1.1 127684 2v79A 135 31.11 1qy1A 174 31.89 b.60.1.1 96568 2qjlA 99 32.20 2hs8A 402 32.57 1z41A 338 32.72 c.1.4.1 124421 2gouA 365 32.99 2id1A 130 34.35 1x0oA 119 34.76 2alaA 391 35.15 b.1.18.4,f.10.1.1 126973,126974 1sc3B 88 35.69 2aynA 404 36.34 d.3.1.9 127563 1j0mA 752 36.62 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 1k12A 158 36.73 b.18.1.15 71978 1bkcI 256 37.20 d.92.1.10 40334 2hc8A 113 37.59 1n13B 113 37.80 1epaA 164 37.84 b.60.1.1 27128 1ih7A 903 38.26 c.55.3.5,e.8.1.1 62375,62376 1dykA 394 38.60 b.29.1.4,b.29.1.4 24223,24224 2io8A 619 39.20 c.30.1.7,d.3.1.15,d.142.1.8 137549,137550,137551 2h88B 252 39.87 2o5aA 125 40.52 2abbA 364 40.58 c.1.4.1 126517 1g8lA 411 40.59 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1nnvA 110 41.37 d.17.7.1 92012 1or0B 528 41.73 2i2lA 142 41.80 2a1kA 233 42.01 1nxzA 246 44.70 b.122.1.2,c.116.1.5 86391,86392 2r6uA 148 44.81 1b8oA 284 45.23 c.56.2.1 33762 1qf6A 642 45.94 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 2jd4A 383 45.98 1i06A 180 46.78 b.60.1.1 27131 2geeA 203 47.20 1t9hA 307 47.54 b.40.4.5,c.37.1.8 112358,112359 2rkqA 169 47.72 2fjlA 150 48.17 b.55.1.1 133611 1et7A 341 49.36 b.6.1.3,b.6.1.3 23070,23071 2p5dA 147 50.53 2gar 212 50.63 1i78A 297 51.22 f.4.4.1 66046 1xo7A 166 51.27 b.62.1.1 115694 2psoA 237 52.02 1zldA 120 53.00 2jodA 106 55.56 2nzhA 113 56.04 1g6xA 58 56.96 g.8.1.1 60320 1u11A 182 57.20 c.23.8.1 107576 2z07A 420 57.45 2qv3A 457 57.47 1fxxA 482 58.05 c.55.3.5 33726 3c2qA 345 58.09 1gd7A 109 58.42 b.40.4.4 60441 2hsaA 402 59.49 2i57A 438 59.55 1svcP 365 59.94 b.1.18.1,b.2.5.3 21924,22443 1ae9A 179 60.19 d.163.1.1 42153 1lxkA 721 60.57 a.102.3.2,b.24.1.1,b.30.5.2 74331,74332,74333 2h2tB 175 60.78 1m6uA 272 61.22 b.2.5.7 78706 2cwzA 141 61.44 d.38.1.7 130961 2z1cA 75 61.54 1rxyA 253 61.74 c.56.2.1 98065 1p3wA 404 63.21 c.67.1.3 87752 1kv7A 488 63.43 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1j1nA 492 64.88 c.94.1.1 83978 2a1hA 365 65.63 e.17.1.1 125997 1qqsA 174 65.84 b.60.1.1 27143 2oh5A 248 66.12 1q1gA 276 66.35 c.56.2.1 95574 2bkdN 134 66.36 2bt6A 108 67.34 d.15.4.1 129152 1fqvA 336 67.40 a.158.1.1,c.10.1.3 19254,30856 1lf7A 182 67.43 b.60.1.1 73878 1z1zA 131 67.83 d.323.1.1 124366 2jg0A 535 67.84 1pxfA 111 67.91 b.40.4.4 88341 1syxB 86 68.73 d.76.1.1 119081 1ao0A 459 68.77 c.61.1.1,d.153.1.1 34049,41816 1i8dA 213 71.09 b.43.4.3,b.43.4.3 61953,61954 2f1cX 286 71.85 2qkhA 135 72.40 2ra6A 166 72.60 2yyoA 171 73.05 2av9A 147 74.12 d.38.1.1 127365 1wzaA 488 74.60 b.71.1.1,c.1.8.1 121489,121490 2essA 248 75.40 d.38.1.8,d.38.1.8 132346,132347 3c5tA 122 75.41 2eqjA 66 75.70 1kthA 58 76.55 g.8.1.1 68863 1gpc 218 76.83 1hx0A 496 76.97 b.71.1.1,c.1.8.1 61346,61347 1yemA 179 77.02 d.63.1.2 116646 2gduA 504 77.63 b.71.1.1,c.1.8.1 135032,135033 1eguA 731 79.61 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1ju8A 37 79.73 g.3.6.4 84231 1kd6A 179 80.06 b.97.1.1 68459 2p0oA 372 80.32 1riiA 265 80.50 c.60.1.1 111807 1eonA 245 80.57 c.52.1.2 33238 1agjA 242 81.35 b.47.1.1 25827 1y3tA 337 83.20 b.82.1.5 122600 2jw5A 106 83.62 2iwvA 281 83.85 2dkhA 639 83.86 1uu1A 335 84.69 c.67.1.1 99993 2h0bA 184 85.82 1sat 471 86.00 1zndA 174 87.56 b.60.1.1 125380 2o5fA 171 88.01 2fi3I 58 88.24 1ualA 274 88.25 c.116.1.4 88383