# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.2198 b.34.9.1 84964 1wgsA 133 0.3857 b.34.13.3 114622 2gfaA 119 0.5135 b.34.9.1,b.34.9.1 135089,135090 1vqoK 132 0.5436 b.39.1.1 120372 1g5vA 88 0.6122 b.34.9.1 60292 1jfxA 217 1.779 c.1.8.8 62943 2eqkA 85 2.739 1n7oA 721 2.961 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1rkiA 102 3.258 d.308.1.2 118776 1pz7A 204 3.293 b.29.1.4 95405 1xniA 118 4.037 b.34.9.1,b.34.9.1 115582,115583 1zc1A 208 4.517 1x1iA 752 4.909 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 2hqxA 246 4.986 b.34.9.1 136675 2ofzA 138 5.735 1f5fA 205 6.358 b.29.1.4 24222 1v6zA 228 6.389 b.122.1.2,c.116.1.5 113551,113552 1ssfA 156 6.649 b.34.9.1,b.34.9.1 105982,105983 1x89A 178 6.662 b.60.1.1 121799 1zoyB 252 7.768 2bjrA 368 8.368 b.169.1.1,b.169.1.1 128628,128629 2btlA 134 8.461 b.148.1.1 129154 1vhyA 257 9.402 b.122.1.2,c.116.1.5 100714,100715 1c4rA 182 9.613 b.29.1.4 24229 2bjqA 345 9.95 b.169.1.1,b.169.1.1 128626,128627 2a90A 240 9.99 1h30A 422 10.98 b.29.1.4,b.29.1.4 76604,76605 1ecxA 384 11.13 c.67.1.3 34431 1sk4A 163 13.01 d.118.1.1 105664 1k12A 158 13.88 b.18.1.15 71978 2cszA 76 15.54 2j5aA 110 15.67 1gpl 432 15.91 1t50A 58 16.36 g.63.1.1 99124 2i9xA 87 18.52 2qqrA 118 18.56 1qtnB 95 19.06 1mwmA 320 19.16 c.55.1.1,c.55.1.1 79580,79581 1kdkA 177 20.51 b.29.1.4 72351 1i06A 180 20.51 b.60.1.1 27131 1pmlA 86 20.69 g.14.1.1 44632 1j1nA 492 21.33 c.94.1.1 83978 1fd9A 213 22.03 d.26.1.1 59771 1kbvA 327 23.50 b.6.1.3,b.6.1.3 68395,68396 1nmeB 92 23.87 2ffwA 78 24.03 1qy1A 174 24.92 b.60.1.1 96568 1fggA 261 25.07 c.68.1.7 34576 2f5kA 102 25.43 b.34.13.3 132995 1qqsA 174 25.56 b.60.1.1 27143 1xo7A 166 25.70 b.62.1.1 115694 1krnA 88 26.28 g.14.1.1 44629 2cwzA 141 26.83 d.38.1.7 130961 1cfb 205 27.75 1x24A 180 29.12 1zldA 120 29.80 2h88B 252 30.37 1i71A 83 30.70 g.14.1.1 61864 1p3wA 404 33.43 c.67.1.3 87752 3b3qE 197 33.70 1uasA 362 33.84 b.71.1.1,c.1.8.1 88388,88389 1b97A 244 34.04 c.52.1.2 33252 2nujA 163 34.30 d.38.1.1 138608 2coiA 386 35.26 1lba 146 36.17 2yyoA 171 36.38 2geeA 203 36.78 1z85A 234 37.90 1wmvA 54 38.51 1lf7A 182 38.88 b.60.1.1 73878 1b94A 244 39.15 c.52.1.2 33250 2gar 212 39.76 2ebeA 106 39.92 1zkcA 197 41.21 b.62.1.1 125182 1ao0A 459 42.33 c.61.1.1,d.153.1.1 34049,41816 2yueA 168 42.78 2gecA 139 42.96 b.148.1.1 135059 2a1hA 365 43.38 e.17.1.1 125997 1cfbA 205 43.78 b.1.2.1,b.1.2.1 21991,21992 1g8kA 825 43.89 b.52.2.2,c.81.1.1 26920,35328 1ih7A 903 44.65 c.55.3.5,e.8.1.1 62375,62376 1v8hA 107 45.55 b.1.18.19 119870 2ps1A 226 46.19 1b96A 244 46.95 c.52.1.2 33268 1eonA 245 47.96 c.52.1.2 33238 1oycA 400 48.26 c.1.4.1 28603 1zndA 174 48.92 b.60.1.1 125380 2ra6A 166 50.48 2fjlA 150 50.59 b.55.1.1 133611 2bxxA 134 51.03 b.148.1.1 129446 1r7aA 504 51.03 b.71.1.1,c.1.8.1 97192,97193 2i2lA 142 51.23 2hs8A 402 51.49 2p3yA 491 51.51 1kv7A 488 53.07 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 2jd4A 383 54.51 2h2tB 175 55.34 1iazA 179 57.96 b.97.1.1 62131 2g84A 197 58.67 c.97.1.2 134766 1eg5A 384 59.15 c.67.1.3 34429 2dbjA 124 59.34 1djqA 729 60.65 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 2av9A 147 61.17 d.38.1.1 127365 2iwvA 281 61.36 1epaA 164 61.95 b.60.1.1 27128 1i78A 297 62.67 f.4.4.1 66046 1x0oA 119 62.88 2dyuA 334 63.23 1pyoB 105 65.07 1go7P 462 65.42 b.80.7.1,d.92.1.6 76245,76246 2egvA 229 65.53 2psoA 237 66.53 1egiA 147 67.28 d.169.1.1 42331 1gwyA 175 67.73 b.97.1.1 83356 1mup 166 70.09 2h8zA 359 70.54 1z41A 338 71.48 c.1.4.1 124421 2aynA 404 73.81 d.3.1.9 127563 2acoA 173 75.75 1b2zA 110 76.87 d.1.1.2 36216 1ris 101 77.26 2f4wA 187 77.44 d.20.1.1 132958 1at0 145 77.63 1g1sA 162 78.34 d.169.1.1,g.3.11.1 65100,65101 1at0A 145 78.38 b.86.1.1 28374 2g3rA 123 78.49 b.34.9.1,b.34.9.1 134570,134571 1louA 101 79.36 d.58.14.1 39323 2dkhA 639 80.76 2b71A 196 81.09 b.62.1.1 128004 2aacA 177 81.42 b.82.4.1 28150 1h0pA 182 81.50 b.62.1.1 76450 1lxkA 721 82.10 a.102.3.2,b.24.1.1,b.30.5.2 74331,74332,74333 1jkxA 212 83.40 c.65.1.1 66813 1g71A 347 83.49 d.264.1.1 43268 1gm6A 175 84.71 b.60.1.1 70272 1j0mA 752 84.79 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 1bngA 110 85.24 d.1.1.2 36184 2hq6A 185 86.46 1bkcI 256 87.17 d.92.1.10 40334 1kt6A 183 87.27 b.60.1.1 84466 2opkA 112 88.86 1bebA 162 88.95 b.60.1.1 27115 1yoaA 159 89.39 b.45.1.2 123775