Best Alignments for T0429

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2dkoB	8.4872e+00	2dkoB/T0429-2dkoB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2e2dC	9.8427e+00	2e2dC/T0429-2e2dC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.40.3.1
2e63A	1.2715e+01	2e63A/T0429-2e63A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2hqxA	1.2991e+01	2hqxA/T0429-2hqxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.1
2r7gA	1.3641e+01	2r7gA/T0429-2r7gA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pyoB	1.5529e+01	1pyoB/T0429-1pyoB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2f86B	1.7715e+01	2f86B/T0429-2f86B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1kjwA	1.8317e+01	1kjwA/T0429-1kjwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.2.1 c.37.1.1
1txkA	1.9123e+01	1txkA/T0429-1txkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.1.18.2 b.30.5.9
1sc3B	2.0955e+01	1sc3B/T0429-1sc3B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ii1A	2.3586e+01	2ii1A/T0429-2ii1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2q8oA	2.4932e+01	2q8oA/T0429-2q8oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1j1nA	2.5783e+01	1j1nA/T0429-1j1nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.94.1.1
1rkiA	2.5993e+01	1rkiA/T0429-1rkiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.308.1.2
1cfbA	2.7181e+01	1cfbA/T0429-1cfbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.1.2.1 b.1.2.1
2o5fA	2.8631e+01	2o5fA/T0429-2o5fA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1iqqA	2.9041e+01	1iqqA/T0429-1iqqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.124.1.1
2qqrA	2.9450e+01	2qqrA/T0429-2qqrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2yueA	2.9804e+01	2yueA/T0429-2yueA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2d9rA	2.9870e+01	2d9rA/T0429-2d9rA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.129.2.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001