# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dkoB	103	4.577		
1txkA	498	4.642	b.1.18.2,b.30.5.9	107425,107426
2ii1A	301	6.220		
2f86B	143	6.255		
1kjwA	295	6.561	b.34.2.1,c.37.1.1	68643,68644
2r7gA	347	6.773		
1wrvA	308	8.049		
2hqxA	246	8.341	b.34.9.1	136675
1iyeA	309	8.545	e.17.1.1	83786
2a4dA	160	8.890	d.20.1.1	126152
1rkiA	102	9.206	d.308.1.2	118776
2q8oA	136	9.353		
2b0vA	153	9.410	d.113.1.1	127650
2e63A	170	9.507		
2eiyA	308	9.530		
1iznB	277	10.19	e.43.1.2	83848
2d9rA	104	10.44	b.129.2.1	131350
1j1nA	492	10.62	c.94.1.1	83978
2e2dC	180	11.03	b.40.3.1	131980
2qqrA	118	11.27		
2cdpA	160	11.98		
1cfbA	205	14.09	b.1.2.1,b.1.2.1	21991,21992
3cswA	285	14.68		
2f1lA	187	15.21	b.41.1.4,b.43.3.4	132780,132781
1lufA	343	16.06	d.144.1.7	78223
1sc3B	88	16.24		
3b6nA	187	16.45		
1pyoB	105	16.60		
1iqqA	200	16.62	d.124.1.1	66274
2f4lA	297	17.28	b.23.3.1	132927
1g2qA	187	21.76	c.61.1.1	65117
2gfaA	119	22.71	b.34.9.1,b.34.9.1	135089,135090
2o5fA	171	23.59		
2nliA	368	24.66		
1k2eA	156	26.22	d.113.1.1	72010
1p0kA	349	27.62	c.1.4.1	87648
1qtnB	95	28.63		
2yueA	168	28.66		
2ov6A	101	28.68		
1rlwA	126	31.61	b.7.1.1	23177
1z4vA	532	34.13		
2cwrA	103	34.73		
2f1cX	286	35.02		
1d2eA	397	35.22	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
1wr8A	231	37.35	c.108.1.10	114836
2j2jA	197	37.35		
2a1hA	365	37.89	e.17.1.1	125997
2h41A	95	38.68		
1xovA	326	40.11	b.34.11.4,c.56.5.6	122206,122207
1br9	194	42.09		
1xe7A	203	43.09	b.82.1.16	115213
1iarB	207	44.20	b.1.2.1,b.1.2.1	22037,22038
1ahsA	126	44.28	b.19.1.1	23794
2g7iA	125	44.93		
1cq3A	233	45.72	b.27.1.1	23923
2jixB	225	45.78		
2iwvA	281	46.72		
2fytA	340	47.73	c.66.1.6	134391
1qg3A	195	49.57	b.1.2.1,b.1.2.1	21993,21994
1k12A	158	54.41	b.18.1.15	71978
2jz2A	66	54.60		
2am1A	454	55.06		
1zd7A	159	55.24		
2e5aA	347	55.62		
1xkiA	162	56.44	b.60.1.1	115408
2essA	248	56.96	d.38.1.8,d.38.1.8	132346,132347
1mi8A	158	59.01	b.86.1.2	91279
2qv2A	342	59.69		
2rb8A	104	60.52		
2q8nA	460	61.54		
2cztA	167	64.12		
2qr6A	393	64.99		
1ul7A	102	65.50	d.129.6.1	99540
3d48R	211	67.44		
1i2sA	282	68.24	e.3.1.1	71104
1m0wA	491	68.86	c.30.1.4,d.142.1.6	78363,78364
1nmeB	92	70.74		
1ka8A	100	71.24	a.4.5.20	72241
2eqkA	85	71.43		
1kl9A	182	72.83	a.60.14.1,b.40.4.5	111574,111575
1uwfA	158	74.55	b.2.3.2	119758
1wzvA	155	75.48	d.20.1.1	121529
1ten	90	77.50		
2pmzA	880	77.99		
2bkdN	134	78.04		
1y3nA	490	80.61	c.94.1.1	122597
2jn9A	105	81.30		
1apyB	141	81.46		
1o0xA	262	81.77	d.127.1.1	80755
1w4sA	174	82.55		
1lkeA	184	82.57	b.60.1.1	84622
1y9lA	115	83.71		
2qdeA	397	85.51		
2rexB	197	86.50		
2eryA	172	86.54	c.37.1.8	132306
2fvvA	194	87.42	d.113.1.1	134226
1x89A	178	87.66	b.60.1.1	121799