# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2e63A 170 2.203 2e2dC 180 3.049 b.40.3.1 131980 2hqxA 246 3.148 b.34.9.1 136675 1iznB 277 3.385 e.43.1.2 83848 1rkiA 102 3.529 d.308.1.2 118776 2qqrA 118 3.689 2cdpA 160 4.015 2q8oA 136 4.908 2f4lA 297 5.083 b.23.3.1 132927 3b6nA 187 5.591 2ii1A 301 5.650 2gfaA 119 5.904 b.34.9.1,b.34.9.1 135089,135090 2f1lA 187 7.286 b.41.1.4,b.43.3.4 132780,132781 1txkA 498 7.434 b.1.18.2,b.30.5.9 107425,107426 1lufA 343 8.606 d.144.1.7 78223 1m0wA 491 9.079 c.30.1.4,d.142.1.6 78363,78364 2rc5A 314 9.532 2d9rA 104 9.785 b.129.2.1 131350 2yueA 168 9.97 1k12A 158 10.33 b.18.1.15 71978 2fytA 340 11.14 c.66.1.6 134391 1cfbA 205 11.55 b.1.2.1,b.1.2.1 21991,21992 1g2qA 187 11.97 c.61.1.1 65117 2a4dA 160 14.19 d.20.1.1 126152 1z4vA 532 14.20 2nliA 368 16.48 1iqqA 200 16.90 d.124.1.1 66274 2bkdN 134 18.17 1ul7A 102 18.54 d.129.6.1 99540 2eisA 133 21.23 1mi8A 158 21.33 b.86.1.2 91279 2r7gA 347 21.42 2dkoB 103 21.76 1kjwA 295 22.34 b.34.2.1,c.37.1.1 68643,68644 1cq3A 233 22.55 b.27.1.1 23923 1sc3B 88 23.18 2cwrA 103 24.84 1wrvA 308 25.28 1y7mA 164 25.52 b.160.1.1,d.7.1.1 122696,122697 3cswA 285 25.92 2jz2A 66 28.51 2h41A 95 28.91 2j2jA 197 30.17 2rexB 197 32.62 1xovA 326 33.48 b.34.11.4,c.56.5.6 122206,122207 2f5kA 102 34.40 b.34.13.3 132995 2eiyA 308 36.36 2eqkA 85 36.78 2cztA 167 37.72 1p0kA 349 37.98 c.1.4.1 87648 1br9 194 38.55 2b0vA 153 38.72 d.113.1.1 127650 1j1nA 492 39.35 c.94.1.1 83978 2btlA 134 39.62 b.148.1.1 129154 1k2eA 156 39.72 d.113.1.1 72010 1iyeA 309 40.22 e.17.1.1 83786 1qtnB 95 42.49 1rlwA 126 42.60 b.7.1.1 23177 1xe7A 203 42.77 b.82.1.16 115213 2ckkA 127 43.01 2f86B 143 44.29 1ikpA 613 45.21 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1ybyA 215 45.83 1pyoB 105 46.61 1zxfA 155 47.28 d.129.3.5 125771 1mucA 373 47.86 c.1.11.2,d.54.1.1 29236,38880 2nujA 163 49.36 d.38.1.1 138608 1w4sA 174 50.90 1kl9A 182 50.94 a.60.14.1,b.40.4.5 111574,111575 2pmzA 880 51.27 1fx7A 230 51.35 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1oqeA 144 51.52 b.22.1.1 87286 2jixB 225 52.42 1d2eA 397 52.56 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2qr6A 393 54.58 1nbwA 607 54.73 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1i2sA 282 55.13 e.3.1.1 71104 2g7iA 125 55.45 1uwfA 158 57.56 b.2.3.2 119758 1f3lA 321 57.85 c.66.1.6 59630 2o5fA 171 60.46 2dyjA 95 61.95 2j12A 194 63.08 b.21.1.1 137932 3buuA 229 63.68 2rh0A 157 64.01 1nxjA 183 64.62 c.8.7.1 86382 1mhnA 59 64.68 b.34.9.1 84964 2essA 248 65.48 d.38.1.8,d.38.1.8 132346,132347 2qggA 182 67.26 1ywnA 316 67.54 d.144.1.7 124161 1ahsA 126 68.35 b.19.1.1 23794 2b5hA 200 69.32 b.82.1.19 127894 2oynA 146 69.60 1yleA 342 69.87 d.108.1.8 123647 1nmeB 92 70.10 1nnvA 110 72.80 d.17.7.1 92012 1y9lA 115 73.53 2du2A 374 73.76 1j1lA 290 74.94 b.82.1.12 90766 2jn9A 105 75.29 2vhjA 331 76.33 1qavA 90 77.72 b.36.1.1 24777 2bfxA 284 78.41 1m6kA 251 79.06 e.3.1.1 78695 2i9uA 439 79.27 1s5uA 138 80.15 d.38.1.1 98573 2am1A 454 80.55 1z94A 147 80.66 d.129.3.5 124740 2yrvA 117 81.66 1i8dA 213 82.05 b.43.4.3,b.43.4.3 61953,61954 1uf5A 303 83.42 d.160.1.2 107808 2pzhA 135 83.65 1m1fA 110 84.10 b.34.6.2 78401 2q1mA 130 84.34 1q8yA 373 84.41 d.144.1.7 96234 3ci0I 89 84.72 1apyB 141 86.07 1wraA 308 86.49 d.157.1.8 121190 1usrA 454 87.58 b.68.1.1 99881 1fd9A 213 87.85 d.26.1.1 59771 2crvA 120 88.19 1xkiA 162 88.64 b.60.1.1 115408 1te0A 318 89.02 b.36.1.4,b.47.1.1 112400,112401