# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2f86B 143 2.941 2q8oA 136 4.430 2dkoB 103 4.768 2r7gA 347 8.007 1pyoB 105 9.200 2hqxA 246 9.602 b.34.9.1 136675 2e2dC 180 10.75 b.40.3.1 131980 1cfbA 205 11.35 b.1.2.1,b.1.2.1 21991,21992 1iqqA 200 12.01 d.124.1.1 66274 1sc3B 88 12.03 1txkA 498 12.10 b.1.18.2,b.30.5.9 107425,107426 2e63A 170 13.19 1iznB 277 13.49 e.43.1.2 83848 1iyeA 309 14.27 e.17.1.1 83786 1ul7A 102 14.29 d.129.6.1 99540 1rkiA 102 14.78 d.308.1.2 118776 2qdeA 397 15.13 1wrvA 308 15.63 2d9rA 104 18.99 b.129.2.1 131350 2eiyA 308 20.71 2cdpA 160 20.93 1j1nA 492 21.49 c.94.1.1 83978 1lufA 343 21.68 d.144.1.7 78223 1kjwA 295 22.73 b.34.2.1,c.37.1.1 68643,68644 2o5fA 171 22.82 2ov6A 101 23.69 2qqrA 118 23.86 1qtnB 95 24.59 1d2eA 397 25.73 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1g2qA 187 26.30 c.61.1.1 65117 3cswA 285 26.64 3b6nA 187 28.10 2h41A 95 29.09 2f1lA 187 29.39 b.41.1.4,b.43.3.4 132780,132781 1wueA 386 30.54 c.1.11.2,d.54.1.1 114892,114893 2afhE 289 31.23 c.37.1.10 126683 1rlwA 126 32.33 b.7.1.1 23177 1iarB 207 34.16 b.1.2.1,b.1.2.1 22037,22038 1qg3A 195 34.43 b.1.2.1,b.1.2.1 21993,21994 2a4dA 160 34.68 d.20.1.1 126152 2b0vA 153 35.30 d.113.1.1 127650 2jixB 225 35.51 2fytA 340 35.61 c.66.1.6 134391 1mucA 373 36.10 c.1.11.2,d.54.1.1 29236,38880 1br9 194 36.99 2q8nA 460 37.52 2yueA 168 37.56 2pmzA 880 38.69 2nliA 368 39.25 1xovA 326 40.20 b.34.11.4,c.56.5.6 122206,122207 1z4vA 532 41.27 1ahsA 126 44.00 b.19.1.1 23794 2a1hA 365 44.11 e.17.1.1 125997 1cq3A 233 44.87 b.27.1.1 23923 2j01E 206 44.95 1ten 90 46.81 3buuA 229 47.38 1p0kA 349 48.47 c.1.4.1 87648 1wraA 308 48.73 d.157.1.8 121190 2gfaA 119 48.84 b.34.9.1,b.34.9.1 135089,135090 3d48R 211 48.98 1k2eA 156 50.32 d.113.1.1 72010 1qavA 90 50.35 b.36.1.1 24777 2ftsA 419 51.33 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1mi8A 158 53.36 b.86.1.2 91279 1ehsA 48 54.77 g.2.1.1 43998 1d4aA 273 55.13 c.23.5.3 31219 1zd7A 159 55.48 1uf5A 303 56.17 d.160.1.2 107808 2j2jA 197 56.42 2iwvA 281 56.91 1uasA 362 57.86 b.71.1.1,c.1.8.1 88388,88389 2bkdN 134 58.92 2rb8A 104 59.81 1zxfA 155 60.73 d.129.3.5 125771 1s1dA 331 62.02 b.67.3.1 98344 1apyB 141 64.02 2g7iA 125 67.23 2ii1A 301 67.84 2yzkA 178 68.46 1dqsA 393 69.11 e.22.1.1 43347 2b3hA 329 69.49 1vc3B 97 70.48 2f4lA 297 73.36 b.23.3.1 132927 1i2sA 282 73.69 e.3.1.1 71104 1nmeB 92 76.28 2oktA 342 81.28 2am1A 454 81.52 1ni5A 433 82.51 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1qhoA 686 84.10 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1llaA 628 84.53 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1q7gA 359 85.55 c.2.1.3,d.81.1.2 96038,96039 2jn9A 105 86.84 2f1cX 286 87.70 1fnaA 91 88.67 b.1.2.1 21971 2qgzA 308 89.76