# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dkoB	103	2.877		
2f86B	143	4.267		
1pyoB	105	5.924		
2q8oA	136	6.312		
2qdeA	397	6.382		
2r7gA	347	6.671		
1sc3B	88	7.272		
2e2dC	180	8.170	b.40.3.1	131980
1wrvA	308	8.272		
1j1nA	492	8.431	c.94.1.1	83978
1iyeA	309	9.177	e.17.1.1	83786
2eiyA	308	10.31		
2hqxA	246	12.34	b.34.9.1	136675
2e63A	170	15.05		
3cswA	285	15.31		
1txkA	498	15.42	b.1.18.2,b.30.5.9	107425,107426
1kjwA	295	16.82	b.34.2.1,c.37.1.1	68643,68644
1qtnB	95	17.85		
1iqqA	200	18.21	d.124.1.1	66274
1cfbA	205	19.08	b.1.2.1,b.1.2.1	21991,21992
2d9rA	104	19.12	b.129.2.1	131350
2o5fA	171	19.55		
1lufA	343	19.60	d.144.1.7	78223
1iznB	277	21.65	e.43.1.2	83848
2a1hA	365	21.77	e.17.1.1	125997
1br9	194	22.36		
2cdpA	160	22.54		
1rkiA	102	24.57	d.308.1.2	118776
1ul7A	102	24.92	d.129.6.1	99540
1d2eA	397	28.38	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
2afhE	289	28.49	c.37.1.10	126683
2ov6A	101	29.72		
2b0vA	153	29.76	d.113.1.1	127650
2j2jA	197	29.90		
1p0kA	349	30.89	c.1.4.1	87648
2nliA	368	32.11		
2q8nA	460	33.15		
2qqrA	118	34.57		
1wueA	386	36.19	c.1.11.2,d.54.1.1	114892,114893
3b6nA	187	36.41		
8abp	306	36.91		
1ehsA	48	39.93	g.2.1.1	43998
2h41A	95	39.96		
1mucA	373	40.48	c.1.11.2,d.54.1.1	29236,38880
1nmeB	92	40.65		
1rlwA	126	41.01	b.7.1.1	23177
1xovA	326	41.29	b.34.11.4,c.56.5.6	122206,122207
1g2qA	187	41.76	c.61.1.1	65117
2iwvA	281	41.90		
1iarB	207	42.22	b.1.2.1,b.1.2.1	22037,22038
2jixB	225	45.99		
2a4dA	160	46.40	d.20.1.1	126152
2am1A	454	46.55		
2f1lA	187	46.80	b.41.1.4,b.43.3.4	132780,132781
2ftsA	419	47.49	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
1zd7A	159	47.98		
2pmzA	880	49.07		
2yueA	168	49.91		
1d4aA	273	54.28	c.23.5.3	31219
1y3nA	490	55.71	c.94.1.1	122597
2rexB	197	56.15		
1wraA	308	56.39	d.157.1.8	121190
1qg3A	195	56.91	b.1.2.1,b.1.2.1	21993,21994
1mi8A	158	57.87	b.86.1.2	91279
2fytA	340	58.95	c.66.1.6	134391
3buuA	229	59.05		
2j01E	206	59.72		
1s1dA	331	60.44	b.67.3.1	98344
1ahsA	126	60.60	b.19.1.1	23794
1ten	90	62.08		
1apyB	141	62.88		
1k2eA	156	62.93	d.113.1.1	72010
1cq3A	233	63.11	b.27.1.1	23923
3d48R	211	63.17		
1hfuA	503	64.05	b.6.1.3,b.6.1.3,b.6.1.3	65827,65828,65829
2bkdN	134	64.96		
1uasA	362	65.53	b.71.1.1,c.1.8.1	88388,88389
2b3hA	329	67.85		
2ii1A	301	70.47		
1z4vA	532	71.44		
1zxfA	155	76.09	d.129.3.5	125771
2qv2A	342	76.17		
1qavA	90	76.95	b.36.1.1	24777
2gfaA	119	77.04	b.34.9.1,b.34.9.1	135089,135090
2f1cX	286	77.31		
1llaA	628	79.95	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
2qgzA	308	80.18		
1xe7A	203	81.36	b.82.1.16	115213
2pulA	397	81.97		
1di1A	300	82.61	a.128.1.4	19446
2rb8A	104	84.46		
2nyuA	196	86.03		
2ozgA	396	86.64		
2g7iA	125	87.08		
2oktA	342	87.62		
2h5uA	499	89.75		
2f4lA	297	89.96	b.23.3.1	132927