# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2r7gA	347	1.009		
2o5fA	171	2.136		
2e2dC	180	2.691	b.40.3.1	131980
1br9	194	4.657		
1j1nA	492	4.742	c.94.1.1	83978
2jn9A	105	5.107		
2ov6A	101	5.185		
1kjwA	295	5.309	b.34.2.1,c.37.1.1	68643,68644
2e63A	170	5.994		
2yueA	168	6.838		
2dkoB	103	7.217		
2fytA	340	9.723	c.66.1.6	134391
2ii1A	301	10.78		
1ixkA	315	11.02	c.66.1.38	90716
2oauA	306	11.07	b.38.1.3,d.58.43.1,f.34.1.1	138978,138979,138980
1pyoB	105	12.30		
1txkA	498	13.27	b.1.18.2,b.30.5.9	107425,107426
2hqxA	246	13.75	b.34.9.1	136675
2q37A	181	13.88		
2bkdN	134	15.50		
1xovA	326	16.36	b.34.11.4,c.56.5.6	122206,122207
2f86B	143	18.24		
2qqrA	118	18.86		
2qdeA	397	19.47		
2ywqA	105	19.86		
1evlA	401	21.24	c.51.1.1,d.104.1.1	33202,40751
1f3lA	321	22.80	c.66.1.6	59630
2rc5A	314	23.49		
2oltA	227	23.53		
1wueA	386	25.16	c.1.11.2,d.54.1.1	114892,114893
2d9rA	104	25.52	b.129.2.1	131350
1i2sA	282	28.07	e.3.1.1	71104
1iyeA	309	30.49	e.17.1.1	83786
2nyuA	196	31.20		
1sc3B	88	33.09		
2nx9A	464	33.90		
2e5aA	347	34.50		
1wkuA	254	35.86		
1guxB	152	36.52	a.74.1.3	18389
1iqqA	200	37.30	d.124.1.1	66274
2fkbA	180	37.85	d.113.1.2	133650
2j2jA	197	38.92		
2v7bA	529	40.56		
1y3nA	490	40.83	c.94.1.1	122597
1rkiA	102	43.02	d.308.1.2	118776
1fp3A	402	43.61	a.102.1.3	18842
2a1hA	365	44.58	e.17.1.1	125997
2j01E	206	44.63		
2hipA	72	44.73	g.35.1.1	44991
1apyB	141	45.33		
3b3fA	341	45.35		
1ka8A	100	46.31	a.4.5.20	72241
1t82A	155	46.38	d.38.1.5	106639
3d48R	211	46.60		
1squA	155	46.94	d.252.1.1	98971
1u9lA	70	48.01	a.60.4.2	107751
2b0vA	153	48.05	d.113.1.1	127650
1cewI	108	52.98	d.17.1.2	37999
1cfbA	205	53.50	b.1.2.1,b.1.2.1	21991,21992
2f4lA	297	54.44	b.23.3.1	132927
1zd0A	150	54.46	d.329.1.1	124927
2olnA	397	54.79		
1vqoQ	96	55.07	b.34.5.1	120378
2coiA	386	55.87		
2j12A	194	56.30	b.21.1.1	137932
1byrA	155	59.70	d.136.1.1	41450
2jixB	225	63.03		
1qtnB	95	63.67		
2j3mA	572	64.55		
1kshB	152	64.58	b.1.18.8	72915
1hztA	190	65.56	d.113.1.2	61459
1ktbA	405	65.73	b.71.1.1,c.1.8.1	72960,72961
2gqrA	237	66.96		
1f9yA	158	67.60	d.58.30.1	83249
1z4vA	532	67.93		
1iarB	207	68.58	b.1.2.1,b.1.2.1	22037,22038
2q14A	410	73.82		
1p35A	299	75.04	b.28.1.1	23925
1zxfA	155	75.24	d.129.3.5	125771
1u2bA	138	75.55	b.55.1.1	119474
2ckkA	127	75.63		
1ryaA	160	76.41	d.113.1.5	105122
1z1zA	131	77.36	d.323.1.1	124366
2okxA	956	78.76		
1uasA	362	80.06	b.71.1.1,c.1.8.1	88388,88389
2cdpA	160	88.06		
2qv2A	342	89.62