# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1uasA 362 1.002 b.71.1.1,c.1.8.1 88388,88389 1ux6A 350 3.596 b.29.1.16,g.75.1.1 100145,100146 2ebsA 789 6.217 1so7A 382 6.667 b.68.1.1 112106 2e2dC 180 7.402 b.40.3.1 131980 2dt4A 143 8.891 1uf5A 303 10.43 d.160.1.2 107808 1f89A 291 10.57 d.160.1.1 64988 2a4dA 160 10.74 d.20.1.1 126152 1qhoA 686 12.64 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 2nliA 368 15.86 1atiA 505 16.51 c.51.1.1,d.104.1.1 33196,40745 2q18X 293 18.86 2biwA 490 19.44 2uwxA 494 19.69 e.3.1.1 140002 2f86B 143 19.84 1iqqA 200 20.61 d.124.1.1 66274 2qdeA 397 20.97 3c2uA 538 21.96 1kjwA 295 24.24 b.34.2.1,c.37.1.1 68643,68644 1eu3A 210 25.32 b.40.2.2,d.15.6.1 25206,37795 1qtnB 95 26.27 2vcyA 344 27.25 4bcl 366 29.58 1wn1A 356 29.89 2i4lA 458 31.86 1jndA 420 31.97 c.1.8.5,d.26.3.1 71757,71758 1ktbA 405 35.22 b.71.1.1,c.1.8.1 72960,72961 1apyB 141 36.36 1ju2A 536 36.38 c.3.1.2,d.16.1.1 77169,77170 1hnjA 317 36.68 c.95.1.2,c.95.1.2 35969,35970 2pmqA 377 38.48 1i8dA 213 39.96 b.43.4.3,b.43.4.3 61953,61954 1g0dA 695 40.37 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 2eyuA 261 40.79 2coiA 386 41.70 2v9lA 274 42.65 1pxzA 346 42.70 b.80.1.1 111643 1rg8A 146 44.08 b.42.1.1 111801 2r3uA 211 44.43 2rduA 387 45.72 1ojjA 402 50.36 b.29.1.10 93130 2p0iA 456 51.55 1xngA 268 51.59 c.26.2.1 122186 1nc5A 373 51.66 a.102.1.6 85548 2dkoB 103 52.45 1k8wA 327 53.44 b.122.1.1,d.265.1.2 83094,90388 2r7gA 347 53.80 2ii1A 301 54.04 2cfcA 250 55.63 2opoA 86 57.31 a.39.1.10 139209 1pyoB 105 57.81 1hx0A 496 57.89 b.71.1.1,c.1.8.1 61346,61347 1xfsA 178 62.68 d.129.3.5 109589 3bmvA 683 63.33 2rerA 173 67.90 1ev5A 264 69.19 d.117.1.1 40935 1sc3B 88 69.26 1o7iA 119 69.63 b.40.4.3 86642 2yueA 168 70.95 1sqjA 789 72.07 b.69.13.1,b.69.13.1 105918,105919 1g8iA 190 72.41 a.39.1.5 60363 1d3cA 686 73.45 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2jgpA 520 77.52 1rkiA 102 77.74 d.308.1.2 118776 1nmsA 249 77.89 c.17.1.1 85879 2a1hA 365 79.45 e.17.1.1 125997 1mtyD 512 79.49 a.25.1.2 16742 1w6gA 646 79.49 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 1jiwI 106 79.62 b.61.2.1 63078 1lufA 343 83.23 d.144.1.7 78223 2bj0A 203 83.37 2c0nA 203 83.48 1sddA 306 83.76 b.6.1.3,b.6.1.3 105431,105432 1o2dA 371 84.07 e.22.1.2 86591 2iwbA 246 84.42 2hlyA 207 84.74 1vjjA 692 85.33 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 2r19A 159 85.46 1t17A 148 88.63 d.129.3.6 112215 2okcA 445 88.71 3cpnA 330 88.89 1whsA 255 88.90 c.69.1.5 34649 2ghaA 382 89.25 1q7gA 359 89.78 c.2.1.3,d.81.1.2 96038,96039