# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dkoB	103	2.994		
2e2dC	180	3.002	b.40.3.1	131980
2f86B	143	3.318		
1kjwA	295	4.176	b.34.2.1,c.37.1.1	68643,68644
1cfbA	205	4.298	b.1.2.1,b.1.2.1	21991,21992
2q8oA	136	5.978		
1iyeA	309	6.621	e.17.1.1	83786
1wrvA	308	8.833		
2hqxA	246	9.089	b.34.9.1	136675
1pyoB	105	9.129		
2ii1A	301	9.151		
1p0kA	349	9.203	c.1.4.1	87648
1iqqA	200	9.696	d.124.1.1	66274
2nliA	368	10.30		
2eiyA	308	10.32		
1j1nA	492	10.43	c.94.1.1	83978
1sc3B	88	11.60		
2d9rA	104	12.69	b.129.2.1	131350
2r7gA	347	12.77		
1lufA	343	12.83	d.144.1.7	78223
1iznB	277	13.15	e.43.1.2	83848
3cswA	285	13.42		
1rkiA	102	13.77	d.308.1.2	118776
2f1lA	187	16.39	b.41.1.4,b.43.3.4	132780,132781
2a1hA	365	16.90	e.17.1.1	125997
1txkA	498	16.91	b.1.18.2,b.30.5.9	107425,107426
2e63A	170	16.93		
2cdpA	160	17.82		
2j01E	206	18.27		
1nmeB	92	18.86		
2ov6A	101	20.68		
1br9	194	20.89		
2qdeA	397	21.32		
2qqrA	118	21.81		
1qg3A	195	21.98	b.1.2.1,b.1.2.1	21993,21994
1xovA	326	22.03	b.34.11.4,c.56.5.6	122206,122207
1qtnB	95	22.15		
1ten	90	26.21		
1wueA	386	27.23	c.1.11.2,d.54.1.1	114892,114893
2qr6A	393	27.41		
1q8yA	373	28.74	d.144.1.7	96234
3b6nA	187	29.66		
2bkdN	134	30.47		
2yueA	168	31.71		
3d48R	211	33.03		
2f4lA	297	33.29	b.23.3.1	132927
2afhE	289	33.40	c.37.1.10	126683
2h41A	95	34.71		
1iarB	207	35.74	b.1.2.1,b.1.2.1	22037,22038
1y9lA	115	35.94		
1zd7A	159	35.98		
2iwvA	281	36.52		
1d4aA	273	37.51	c.23.5.3	31219
1g2qA	187	37.56	c.61.1.1	65117
1llaA	628	38.34	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
1apyB	141	39.33		
1rlwA	126	40.02	b.7.1.1	23177
1jksA	294	40.64	d.144.1.7	71710
1zxfA	155	40.77	d.129.3.5	125771
2rexB	197	41.22		
2q8nA	460	42.30		
2am1A	454	43.19		
2jixB	225	44.03		
1cq3A	233	44.64	b.27.1.1	23923
1mucA	373	44.73	c.1.11.2,d.54.1.1	29236,38880
2fytA	340	45.70	c.66.1.6	134391
2g7iA	125	47.90		
1d2eA	397	48.75	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
1hfuA	503	50.03	b.6.1.3,b.6.1.3,b.6.1.3	65827,65828,65829
1uf5A	303	50.07	d.160.1.2	107808
2rb8A	104	50.64		
1p4fA	293	52.36	d.144.1.7	104063
2bfxA	284	52.92		
1eu3A	210	52.92	b.40.2.2,d.15.6.1	25206,37795
2j2jA	197	53.68		
2gfaA	119	54.03	b.34.9.1,b.34.9.1	135089,135090
2j7tA	302	55.90		
1x89A	178	56.00	b.60.1.1	121799
1wraA	308	57.58	d.157.1.8	121190
2pulA	397	58.80		
1i2sA	282	58.82	e.3.1.1	71104
1tenA	90	59.09	b.1.2.1	21990
2qv2A	342	60.63		
1kl9A	182	62.85	a.60.14.1,b.40.4.5	111574,111575
2pmzA	880	64.40		
2o5fA	171	65.26		
2f1cX	286	65.45		
2cztA	167	65.61		
1g0uC	243	65.68	d.153.1.4	41948
1ehsA	48	66.39	g.2.1.1	43998
2coiA	386	67.14		
1eerA	166	67.52	a.26.1.2	16846
2a4dA	160	69.32	d.20.1.1	126152
1xe7A	203	73.34	b.82.1.16	115213
1z4vA	532	73.76		
1uwfA	158	74.57	b.2.3.2	119758
1or0B	528	74.59		
1lkeA	184	74.60	b.60.1.1	84622
1o22A	170	74.85	d.238.1.1	86557
2ftsA	419	74.87	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
1ul7A	102	74.94	d.129.6.1	99540
3buuA	229	77.20		
2du2A	374	78.11		
1t2jA	116	78.41		
1ahsA	126	78.75	b.19.1.1	23794
1y3nA	490	80.81	c.94.1.1	122597
2b5hA	200	82.15	b.82.1.19	127894
1nxjA	183	82.20	c.8.7.1	86382
1fnaA	91	83.56	b.1.2.1	21971
1ywnA	316	83.91	d.144.1.7	124161
1wr8A	231	84.81	c.108.1.10	114836
2yzkA	178	84.85		
2dpyA	438	85.69		
1q5xA	161	86.88	c.8.7.1	95947
1e9gA	286	87.75	b.40.5.1	59393
1xkiA	162	88.06	b.60.1.1	115408