# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2f86B 143 3.115 2dkoB 103 4.571 1cfbA 205 4.773 b.1.2.1,b.1.2.1 21991,21992 2q8oA 136 5.493 1pyoB 105 10.69 1sc3B 88 10.70 2e2dC 180 11.10 b.40.3.1 131980 2hqxA 246 11.79 b.34.9.1 136675 2e63A 170 12.89 1rkiA 102 14.74 d.308.1.2 118776 2qdeA 397 15.06 1txkA 498 15.20 b.1.18.2,b.30.5.9 107425,107426 1kjwA 295 15.33 b.34.2.1,c.37.1.1 68643,68644 1iqqA 200 16.43 d.124.1.1 66274 2d9rA 104 16.71 b.129.2.1 131350 2jixB 225 17.76 2r7gA 347 18.13 1zxfA 155 19.84 d.129.3.5 125771 2cdpA 160 20.22 3b6nA 187 20.92 2qqrA 118 21.85 1qtnB 95 21.91 2nliA 368 22.62 1g2qA 187 24.29 c.61.1.1 65117 1lufA 343 24.41 d.144.1.7 78223 1j1nA 492 24.60 c.94.1.1 83978 2h41A 95 26.99 1qg3A 195 27.39 b.1.2.1,b.1.2.1 21993,21994 2ov6A 101 29.70 1rlwA 126 29.96 b.7.1.1 23177 3cswA 285 32.50 2j2jA 197 33.12 1p0kA 349 33.40 c.1.4.1 87648 2yueA 168 33.71 2o5fA 171 35.84 1nmeB 92 36.08 1iarB 207 36.60 b.1.2.1,b.1.2.1 22037,22038 1wrvA 308 38.70 1iyeA 309 38.78 e.17.1.1 83786 1ten 90 39.29 1xovA 326 39.78 b.34.11.4,c.56.5.6 122206,122207 1mucA 373 41.77 c.1.11.2,d.54.1.1 29236,38880 1iznB 277 42.15 e.43.1.2 83848 2a1hA 365 42.18 e.17.1.1 125997 3d48R 211 42.41 1wueA 386 42.61 c.1.11.2,d.54.1.1 114892,114893 2f1lA 187 42.72 b.41.1.4,b.43.3.4 132780,132781 1d2eA 397 43.04 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2j01E 206 44.16 2gfaA 119 44.44 b.34.9.1,b.34.9.1 135089,135090 2pmzA 880 44.69 2fytA 340 44.92 c.66.1.6 134391 1ehsA 48 45.13 g.2.1.1 43998 3buuA 229 46.43 2rb8A 104 46.95 2q8nA 460 47.03 1uasA 362 48.91 b.71.1.1,c.1.8.1 88388,88389 8abp 306 49.79 1ul7A 102 50.26 d.129.6.1 99540 2yzkA 178 50.85 1br9 194 50.97 2afhE 289 51.08 c.37.1.10 126683 2rexB 197 52.53 2a4dA 160 53.24 d.20.1.1 126152 2iwvA 281 53.41 2am1A 454 54.95 2b0vA 153 55.73 d.113.1.1 127650 1ahsA 126 56.89 b.19.1.1 23794 1wraA 308 58.12 d.157.1.8 121190 2bkdN 134 59.07 1k2eA 156 60.07 d.113.1.1 72010 2jn9A 105 61.42 1d4aA 273 62.56 c.23.5.3 31219 2f1cX 286 63.79 2ii1A 301 64.62 2eiyA 308 65.96 2ftsA 419 66.79 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1uheA 97 70.38 1xfsA 178 71.10 d.129.3.5 109589 1uf5A 303 71.63 d.160.1.2 107808 1z4vA 532 71.63 1apyB 141 74.23 1mi8A 158 74.57 b.86.1.2 91279 1i2sA 282 75.56 e.3.1.1 71104 1vc3B 97 77.23 1o22A 170 77.26 d.238.1.1 86557 1fnaA 91 79.93 b.1.2.1 21971 2pulA 397 82.49 1z94A 147 83.74 d.129.3.5 124740 1nxjA 183 84.04 c.8.7.1 86382 1qavA 90 85.78 b.36.1.1 24777 2b3hA 329 88.23 1wr8A 231 89.31 c.108.1.10 114836 1cq3A 233 89.64 b.27.1.1 23923 1qhoA 686 89.82 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738