# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dkoB	103	1.070		
1iyeA	309	1.128	e.17.1.1	83786
1dk8A	147	2.180	a.91.1.1	18548
2o5fA	171	2.429		
1qbkB	890	3.445	a.118.1.1	19127
2r7gA	347	3.695		
2e2dC	180	3.774	b.40.3.1	131980
1j1nA	492	3.994	c.94.1.1	83978
1pyoB	105	4.190		
1br9	194	5.401		
2e63A	170	10.73		
1ul7A	102	11.16	d.129.6.1	99540
1wrvA	308	11.31		
1uasA	362	14.04	b.71.1.1,c.1.8.1	88388,88389
2q37A	181	14.35		
2jn9A	105	15.44		
1iqqA	200	17.54	d.124.1.1	66274
2f1lA	187	18.53	b.41.1.4,b.43.3.4	132780,132781
1xovA	326	19.36	b.34.11.4,c.56.5.6	122206,122207
1vqoQ	96	19.67	b.34.5.1	120378
2fytA	340	20.56	c.66.1.6	134391
1rkiA	102	21.70	d.308.1.2	118776
1ka8A	100	22.05	a.4.5.20	72241
1ktbA	405	23.20	b.71.1.1,c.1.8.1	72960,72961
2p2vA	288	23.95		
2nliA	368	24.24		
2eiyA	308	26.85		
1ixkA	315	28.74	c.66.1.38	90716
1lufA	343	31.01	d.144.1.7	78223
2hqxA	246	31.53	b.34.9.1	136675
2hqvA	195	33.91	e.62.1.2	136674
2fkbA	180	36.03	d.113.1.2	133650
2a1hA	365	38.04	e.17.1.1	125997
1kjwA	295	38.36	b.34.2.1,c.37.1.1	68643,68644
2uubT	106	39.93	a.7.6.1	139951
2vqeT	106	40.14		
2qggA	182	40.47		
2hdeA	148	40.70		
2e8oA	103	44.15		
1nmsA	249	44.40	c.17.1.1	85879
2qdeA	397	45.86		
1txkA	498	46.23	b.1.18.2,b.30.5.9	107425,107426
2yueA	168	46.66		
3butA	136	48.84		
2ii1A	301	49.04		
1s8eA	333	49.28	d.159.1.4	105368
2okuA	131	49.92		
1guxB	152	51.67	a.74.1.3	18389
1fjgT	106	52.46	a.7.6.1	16338
1k2eA	156	53.42	d.113.1.1	72010
2pfuA	99	54.85		
2jixB	225	55.93		
1y3nA	490	56.23	c.94.1.1	122597
2j85A	122	58.00	d.321.1.1	138133
2q8oA	136	58.31		
2bkdN	134	59.99		
2oltA	227	62.16		
1mucA	373	62.71	c.1.11.2,d.54.1.1	29236,38880
2qv2A	342	66.75		
2ov6A	101	69.37		
2am1A	454	70.09		
1mdl	359	72.09		
3bwlA	126	72.33		
1p0kA	349	72.87	c.1.4.1	87648
2pmzA	880	73.65		
2d9rA	104	74.37	b.129.2.1	131350
2j2jA	197	78.74		
2coiA	386	79.94		
1jb7A	495	80.35	b.40.4.3,b.40.4.3,b.40.4.3	62836,62837,62838
1p35A	299	80.87	b.28.1.1	23925
1zo2A	129	82.46		
2gukA	120	82.84		
1ps1A	337	83.01	a.128.1.4	19450
2v7bA	529	84.16		
2d5mA	190	87.20		
1k8wA	327	87.43	b.122.1.1,d.265.1.2	83094,90388
1g0sA	209	88.38	d.113.1.1	60187
1sc3B	88	88.44		
1txlA	215	89.29	b.60.1.4	107429